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rifcsphigho2_02_scaffold_2703

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2703_1

Not on your lists

comp(1..1971)
-----------------
DNA (1971bp)
protein (657aa)
Cu(2+)-binding/translocating P-type ATPase n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SUX6_9BACT
Copper-transporting P-type ATPase {ECO:0000313|EMBL:KHO53728.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
heavy metal translocating P-type ATPase
rifcsphigho2_02_scaffold_2703_2
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

Not on your lists

comp(1997..2233)
-----------------
DNA (237bp)
protein (79aa)
Tax=RBG_16_Micrarchaeota_49_10_curated
rifcsphigho2_02_scaffold_2703_3
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

2372..2728
-----------------
DNA (357bp)
protein (119aa)
PadR-like protein family transcriptional regulator
Transcriptional regulator PadR-like family id=2898898 bin=PER_GWC2_41_7 species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
PadR-like family transcriptional regulator Tax=AR10
rifcsphigho2_02_scaffold_2703_trna_2
unknown

Not on your lists

comp(3282..3394)
-----------------
DNA (113bp)
transferRNA
rifcsphigho2_02_scaffold_2703_4
Thermococcus litoralis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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3451..3942
-----------------
DNA (492bp)
protein (164aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000365EB85
HIT family hydrolase
HIT family hydrolase {ECO:0000313|EMBL:EHR78356.1}; TaxID=523849 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus litoralis (strain A
rifcsphigho2_02_scaffold_2703_5
R_Planctomycetes_50_16, Planctomycetes, Bacteria

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comp(4238..5530)
-----------------
DNA (1293bp)
protein (431aa)
phosphoribosylamine-glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
phosphoribosylamine-glycine ligase (EC:6.3.4.13)
Phosphoribosylamine/glycine ligase n=1 Tax=planctomycete KSU-1 RepID=I3IJ24_9PLAN
rifcsphigho2_02_scaffold_2703_6
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

comp(5570..6139)
-----------------
DNA (570bp)
protein (190aa)
cytidylate kinase (EC:2.7.4.14)
hypothetical protein; K07002 id=18248284 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein; K07002 Tax=AR5
rifcsphigho2_02_scaffold_2703_7

Not on your lists


6275..8632
-----------------
DNA (2358bp)
protein (786aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5048462 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02005}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02005};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02005}; TaxID=1579365 species="Archaea.;" source=
Valine-tRNA ligase
rifcsphigho2_02_scaffold_2703_8

Not on your lists

8638..9855
-----------------
DNA (1218bp)
protein (406aa)
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 id=5044348 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Peptide chain release factor subunit 1 {ECO:0000313|EMBL:KHO48283.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
peptide chain release factor 1
rifcsphigho2_02_scaffold_2703_9
unknown

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9886..10305
-----------------
DNA (420bp)
protein (140aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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10454..10654
-----------------
DNA (201bp)
protein (67aa)
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsphigho2_02_scaffold_2703_11
unknown

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comp(10651..10914)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_12
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11209..11376
-----------------
DNA (168bp)
protein (56aa)
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:EDQ31462.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EDQ31462.1};; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DH06_9RHIZ
rifcsphigho2_02_scaffold_2703_13
unknown

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11352..11522
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_14
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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comp(11606..12373)
-----------------
DNA (768bp)
protein (256aa)
hydrolase, tatd family; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Micrarchaeota_36_9_curated
Hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] id=18248276 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein
rifcsphigho2_02_scaffold_2703_15

Not on your lists

comp(12445..12825)
-----------------
DNA (381bp)
protein (127aa)
SSU ribosomal protein s8e; K02995 small subunit ribosomal protein S8e id=5044332 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029, ECO:0000256|SAAS:SAAS00018121}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
30S ribosomal protein S8e
rifcsphigho2_02_scaffold_2703_16
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

12910..13134
-----------------
DNA (225bp)
protein (75aa)
Small nuclear ribonucleoprotein, LSM family; K04796 small nuclear ribonucleoprotein id=18248263 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Small nuclear ribonucleoprotein, LSM family; K04796 small nuclear ribonucleoprotein Tax=AR5
small nuclear ribonucleoprotein
rifcsphigho2_02_scaffold_2703_trna_1
unknown

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13427..13553
-----------------
DNA (127bp)
transferRNA
rifcsphigho2_02_scaffold_2703_17
unknown

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13702..13914
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_18
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

14047..14457
-----------------
DNA (411bp)
protein (137aa)
Marine sediment metagenome DNA, contig: S12H4_L01120 Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsphigho2_02_scaffold_2703_19
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(14464..16350)
-----------------
DNA (1887bp)
protein (629aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RBG_16_Micrarchaeota_49_10_curated
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=7201944 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
rifcsphigho2_02_scaffold_2703_20
unknown

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comp(16412..16753)
-----------------
DNA (342bp)
protein (114aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_21

Not on your lists

comp(16839..17957)
-----------------
DNA (1119bp)
protein (373aa)
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:KHO51553.1}; EC=6.1.1.2 {ECO:0000313|EMBL:KHO51553.1};; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QUZ5_9EURY
rifcsphigho2_02_scaffold_2703_22
unknown

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comp(17982..18176)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_23
unknown

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comp(18258..18683)
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_24
unknown

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comp(18680..18874)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsphigho2_02_scaffold_2703_25
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

19200..19388
-----------------
DNA (189bp)
protein (63aa)
Tax=CG_Woesearch_01
rifcsphigho2_02_scaffold_2703_26
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19405..19881
-----------------
DNA (477bp)
protein (159aa)
Putative kinase n=1 Tax=halophilic archaeon J07HB67 RepID=U1PSA6_9EURY
kinase
Kinase {ECO:0000313|EMBL:AHF98832.1}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii XH-48.;"
rifcsphigho2_02_scaffold_2703_27
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19863..20765)
-----------------
DNA (903bp)
protein (301aa)
aminoglycoside phosphotransferase n=1 Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B4221A
kinase; K07028 Tax=GWC2_Geobacteraceae_58_44_curated
aminoglycoside phosphotransferase
rifcsphigho2_02_scaffold_2703_28
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

20816..22054
-----------------
DNA (1239bp)
protein (413aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=CG_Aenigma_01
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003B68385
Displaying items 1-30 of 35 in total

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