ggKbase home page

rifcsphigho2_02_scaffold_13448_1

Organism: RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_37_9

near complete RP 35 / 55 MC: 3 BSCG 10 / 51 MC: 1 ASCG 32 / 38 MC: 1
Location: comp(37..822)

Top 3 Functional Annotations

Value Algorithm Source
3'-5' exoribonuclease Tax=GWA2_OP11_46_7 similarity UNIPROT
DB: UniProtKB
  • Identity: 61.9
  • Coverage: 257.0
  • Bit_score: 316
  • Evalue 2.90e-83
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 id=5046925 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b similarity UNIREF
DB: UNIREF100
  • Identity: 58.7
  • Coverage: 252.0
  • Bit_score: 298
  • Evalue 5.90e-78
Ribosomal RNA-processing protein RRP42 similarity KEGG
DB: KEGG
  • Identity: 52.0
  • Coverage: 252.0
  • Bit_score: 262
  • Evalue 1.70e-67

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWA2_OP11_46_7 → Microgenomates → Bacteria

Sequences

DNA sequence
Length: 786
ATGACAGCAAAACAAGCAAGACAACACATCGTAAAATTATTGAATAAGACAGCGAGATTAGATGGCCGCGGATTTACTGAATACAGAAAACCGATCAGCATTGAGTATAACATCTCAAAAAGCGCAGAAGGCTCTGCAAGAGTCCAGATTGGAGAAACGATTGTATTAGCAGGAGTTAAGATGGAAATTGGTCAGCCATATCCAGACACACCTAATCAAGGCGGCCTTATGGTAGGTGCAGAATTATTACCATTAAGCAATCCAGATTTTGAGTCTGGTCCACCAGGCATACAAGCGATTGAGCTTGGAAGAGTTGTAGACAGGGCAATAAGAGAAGCAAAAGCAATTGATGTTGAGAAGCTCTGCATCACAGAAGGAGAGTTATGCTGGGTAGTGAGCATAGATATCTGCACATTAAATGATGCAGGCAATCTGTTTGACGCAGCTGCATTAGCAGCTTTAGCAGCATTGAAAAATGCAAAACTGCCAGAAAGAGACGGCAAAAAGATAGATTATAAGAAGCTTACAGATGAGAAGCTACCTATCCAAAGATTGCCTATCTCAGTGACTGTATGCAAGATTGCAGACAAATTCTTGGTAGACCCTACAAATGAGGAAGAGGAGGTCATAGATGCAAGGCTGACAGTTGCCTTCATGGAGAATGGGGAAATTTGCGCAATGCAAAAAGGCGGAGATGCAGCATTAACTCTTGCTGATATCGAGCAGATGATAAGCATCGCTGCTGAGAAAAGCCAAGAGTTAAGAAGTGTACTGGATGAAGCATAA
PROTEIN sequence
Length: 262
MTAKQARQHIVKLLNKTARLDGRGFTEYRKPISIEYNISKSAEGSARVQIGETIVLAGVKMEIGQPYPDTPNQGGLMVGAELLPLSNPDFESGPPGIQAIELGRVVDRAIREAKAIDVEKLCITEGELCWVVSIDICTLNDAGNLFDAAALAALAALKNAKLPERDGKKIDYKKLTDEKLPIQRLPISVTVCKIADKFLVDPTNEEEEVIDARLTVAFMENGEICAMQKGGDAALTLADIEQMISIAAEKSQELRSVLDEA*