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rifcsphigho2_02_scaffold_5833

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_5833_1
unknown

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1..90
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_2
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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935..1192
-----------------
DNA (258bp)
protein (86aa)
putative transcription regulator AbrB/SpoV
Putative transcription regulator AbrB/SpoV {ECO:0000313|EMBL:AIC16387.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" sourc
id=5049699 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_5833_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

1171..1536
-----------------
DNA (366bp)
protein (122aa)
Putative transcriptional modulator of MazE/toxin, MazF n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIK2_NITGG
transcriptional modulator of MazE/toxin, MazF Tax=RBG_16_Archaea_50_20_curated
transcriptional modulator of MazE/toxin, MazF
rifcsphigho2_02_scaffold_5833_4
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(1548..2252)
-----------------
DNA (705bp)
protein (235aa)
eif2A; translation initiation factor IF-2 subunit alpha; K03237 translation initiation factor 2 subunit 1 Tax=CG_Pacearch_05
eif2A; translation initiation factor IF-2 subunit alpha; K03237 translation initiation factor 2 subunit 1 id=5050676 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rifcsphigho2_02_scaffold_5833_5
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(2638..3954)
-----------------
DNA (1317bp)
protein (439aa)
Phosphoesterase, RecJ-like protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RBX6_9EURY id=5103092 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
single-stranded DNA-specific exonuclease Tax=CG_Pacearch_05
Phosphoesterase, RecJ-like protein
rifcsphigho2_02_scaffold_5833_6
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(3974..4348)
-----------------
DNA (375bp)
protein (125aa)
Tax=CG_Pacearch_05
rifcsphigho2_02_scaffold_5833_7
unknown

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comp(4371..4568)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_trna_3
unknown

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comp(4431..4557)
-----------------
DNA (127bp)
transferRNA
rifcsphigho2_02_scaffold_5833_8
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(4594..5223)
-----------------
DNA (630bp)
protein (210aa)
O-sialoglycoprotein endopeptidase (EC:2.7.11.1 3.4.24.57); K15904 bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein [EC:2.7.11.1] Tax=CG_Pacearch_05
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037BC5F7
hypothetical protein
rifcsphigho2_02_scaffold_5833_9
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(5225..5443)
-----------------
DNA (219bp)
protein (73aa)
hypothetical protein; K07339 hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
hypothetical protein; K07339 hypothetical protein id=43895 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
rifcsphigho2_02_scaffold_5833_10
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(5440..5646)
-----------------
DNA (207bp)
protein (69aa)
Uncharacterized protein family UPF0150 n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AC27_THEID
hypothetical protein Tax=CG_Pacearch_05
hypothetical protein
rifcsphigho2_02_scaffold_5833_11
unknown

Not on your lists

comp(5742..6026)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_12
unknown

Not on your lists

6117..6518
-----------------
DNA (402bp)
protein (134aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_13
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

6681..7295
-----------------
DNA (615bp)
protein (205aa)
seg 119..135 Tax=CG_Woesearch_02
hypothetical protein id=23734 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
rifcsphigho2_02_scaffold_5833_14
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

7298..7942
-----------------
DNA (645bp)
protein (215aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=T0ZJE8_9ZZZZ
Uncharacterized protein Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_5833_15
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists


comp(7950..9326)
-----------------
DNA (1377bp)
protein (459aa)
SRP54-type protein, GTPase domain n=1 Tax=sediment metagenome RepID=D9PEV7_9ZZZZ
GTP-binding signal recognition particle SRP54 G-domain protein; K03106 signal recognition particle subunit SRP54 Tax=CG_Pacearch_05
SRP54-type protein, GTPase protein
rifcsphigho2_02_scaffold_5833_16
unknown

Not on your lists

comp(9516..9812)
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_17
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(9863..11062)
-----------------
DNA (1200bp)
protein (400aa)
signal recognition particle, receptor; K03110 fused signal recognition particle receptor Tax=CG_Pacearch_05
ftsY; signal recognition particle receptor FtsY; K03110 fused signal recognition particle receptor id=5050700 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Signal recognition particle GTPase
rifcsphigho2_02_scaffold_5833_18
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

11398..11982
-----------------
DNA (585bp)
protein (195aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PEW2_9ZZZZ
Putative uncharacterized protein Tax=CG_Pacearch_05
rifcsphigho2_02_scaffold_5833_19
unknown

Not on your lists

12353..12715
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_trna_2
unknown

Not on your lists

comp(12772..12896)
-----------------
DNA (125bp)
transferRNA
rifcsphigho2_02_scaffold_5833_20
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(13123..13617)
-----------------
DNA (495bp)
protein (165aa)
ndk2; putative nucleoside diphosphate kinase; K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035E6367
nucleoside diphosphate kinase
rifcsphigho2_02_scaffold_5833_21
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists


comp(13619..14188)
-----------------
DNA (570bp)
protein (190aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003738263
30S ribosomal protein S3Ae; K02984 small subunit ribosomal protein S3Ae Tax=CG_Pacearch_05
SSU ribosomal protein S3AE
rifcsphigho2_02_scaffold_5833_22
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

comp(14263..14574)
-----------------
DNA (312bp)
protein (104aa)
LSU ribosomal protein L44E n=1 Tax=nanoarchaeote Nst1 RepID=R1G2S0_9ARCH id=5103148 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
LSU ribosomal protein L44E
id=5050681 Tax=CG_Pacearch_05
rifcsphigho2_02_scaffold_5833_trna_1
unknown

Not on your lists

14737..14873
-----------------
DNA (137bp)
transferRNA
rifcsphigho2_02_scaffold_5833_23
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

15022..15147
-----------------
DNA (126bp)
protein (42aa)
Marine sediment metagenome DNA, contig: S01H1_L00093 Tax=CG_Pacearch_03
rifcsphigho2_02_scaffold_5833_24
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

15147..17090
-----------------
DNA (1944bp)
protein (648aa)
hypothetical protein
id=5103088 Tax=CG_Pacearch_05
rifcsphigho2_02_scaffold_5833_25
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists

17098..23976
-----------------
DNA (6879bp)
protein (2293aa)
Lytic murein transglycosylase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z887_MELRP id=5103087 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Lytic murein transglycosylase
Lytic murein transglycosylase Tax=CG_Pacearch_05
rifcsphigho2_02_scaffold_5833_26
unknown

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comp(24030..24152)
-----------------
DNA (123bp)
protein (41aa)

This feature has no annotations

rifcsphigho2_02_scaffold_5833_27
unknown

Not on your lists

comp(24294..24530)
-----------------
DNA (237bp)
protein (79aa)

This feature has no annotations

Displaying 30 items

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