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rifcsphigho2_02_scaffold_19469_16

Organism: RIFCSPHIGHO2_02_FULL_Archaea_Pacearchaeota_31_29

partial RP 34 / 55 MC: 7 BSCG 24 / 51 ASCG 30 / 38 MC: 1
Location: comp(11604..12296)

Top 3 Functional Annotations

Value Algorithm Source
ribosomal RNA-processing protein rrp4 (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5045975 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18 similarity UNIREF
DB: UNIREF100
  • Identity: 45.2
  • Coverage: 221.0
  • Bit_score: 213
  • Evalue 2.20e-52
exosome complex RNA-binding protein 1; K03679 exosome complex component RRP4 Tax=CG_Pacearch_05 similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 229.0
  • Bit_score: 347
  • Evalue 1.00e-92
putative exosome complex RNA-binding protein 1 similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 221.0
  • Bit_score: 212
  • Evalue 1.40e-52

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Taxonomy

CG_Pacearch_05 → Pacearchaeota → Archaea

Sequences

DNA sequence
Length: 693
ATGATGCAAGAAAAAGAAACAAAAAAAGAAGAAAGAGAAATCGTTATTCCCGGAGAGACAATTGTTTCTGGCGAGGATTATTTGCCTGGAGAAGGAACAAGAAGAGAAAAAGAAGAAATAATTGCCGAAAGATACGGACTAGTTGAACAATCTGGCAAGTTAGTTAAAGTAATTCCTTTATCCGGAGTGTTCATACCAAGAAGAGGCAATGTAATTATCGGACAGGTAATAGACATAAGTTTCAACGGATGGATGACTGACATTAATGCTCCGTATTCATCATTCCTGCCTTTAATGGAAGTGCCAAGATTTATTGACAAGAATAATATTTCAGAATTCATGGATATTGGAGATTTTTTCAGCGCAAAGATTTTTTCAATAAAACAAAAAGGAATTGACTTAACTTTTGATGGAAAAGGCTTAGGAAAATTAGAAGATGGCATGATTGTATTCATTAACCCAAATAAAGTGCCAAGGGTTATTGGAAAAGAAGGAAGCATGATAAAATTAATCAAAGATGAAACAAACTGCAAGATTACAGTCGGGCAAAACGGCTTGGTATGGATTAAAGGAGAAAAAGTAGAAGATGAATTATTTGCAAAAAAAGCAATTATGTTTGTAACTGAAAAATCCTTTGTTAATGGCTTAACTGAAAAAGTACAGAAATTCTTACAAGAGGAGAAGGAAAAATGA
PROTEIN sequence
Length: 231
MMQEKETKKEEREIVIPGETIVSGEDYLPGEGTRREKEEIIAERYGLVEQSGKLVKVIPLSGVFIPRRGNVIIGQVIDISFNGWMTDINAPYSSFLPLMEVPRFIDKNNISEFMDIGDFFSAKIFSIKQKGIDLTFDGKGLGKLEDGMIVFINPNKVPRVIGKEGSMIKLIKDETNCKITVGQNGLVWIKGEKVEDELFAKKAIMFVTEKSFVNGLTEKVQKFLQEEKEK*