ggKbase home page

rifcsphigho2_02_scaffold_41856_7

Organism: RIFCSPHIGHO2_02_FULL_Archaea_Woesearchaeota_40_19b

near complete RP 31 / 55 MC: 6 BSCG 10 / 51 MC: 1 ASCG 32 / 38 MC: 3
Location: comp(3414..4094)

Top 3 Functional Annotations

Value Algorithm Source
ribosomal RNA-processing protein rrp4 (EC:3.1.13.-); K03679 exosome complex component RRP4 Tax=AR9 similarity UNIPROT
DB: UniProtKB
  • Identity: 73.5
  • Coverage: 226.0
  • Bit_score: 345
  • Evalue 5.10e-92
rpr43; exosome RNA binding protein (EC:3.1.13.-); K03679 exosome complex component RRP4 id=5046927 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b similarity UNIREF
DB: UNIREF100
  • Identity: 54.7
  • Coverage: 223.0
  • Bit_score: 260
  • Evalue 1.20e-66
putative exosome complex RNA-binding protein 1 similarity KEGG
DB: KEGG
  • Identity: 50.4
  • Coverage: 224.0
  • Bit_score: 235
  • Evalue 1.10e-59

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

AR9 → Woesearchaeaota → DPANN → Archaea

Sequences

DNA sequence
Length: 681
ATGAGTGAACTATTAGTACAAGAACGAAGTGTAGTTGTTCCCGGAGAGGCTCTTGCCCATGGCATGGATTTCTTACCAGGAGACAACGCTTACCGAGAAAAAGATCAGATTTATTCTAAAGTTTTAGGATTGGTTTCAGTTTCTGGCCGGGTCATCAAGATTACGCCTTTATCAGGACCTTACTTGCCTAAGACCGAAGACAAGATCATTGCCAGAGTAATGGACATTACCATCAGCGGCTGGCGTTTTGAGACTGCTACTGCCTATTCAGCGATGCTGAATGTCAGAGATGCAACCACTCGCTTCGTCAAGAAAGAAGAAGACTTGAGTCAAATTCTCGCTATCGGCGATTACGCAGTAGTGAAAATTGTCAATGTTACTTCCCAAAATTTGATCGACCTGACCATGAAAGAACCTGGTTTGCGAAAAATAACTGGCGGAAGAATCATCAGCATCAACAGCCAAAAAGTTCCCAGAGTAATTGGAAGACAAGGCAGCATGATTTCTTTGATTAAAGATAAGACCGGCTGCGACATTACCGTCGGACAGAATGGATTAATCTGGATCAAAGGAACGCCTGAAGGCGAAGCAAGAGCTGAAAAAGCAATCAAGCTTATCGAAGCAAAATCCCACCTGGAAGGATTGACCGAAAAAATGGAAAAATTCCTTGGGGAGAACTAA
PROTEIN sequence
Length: 227
MSELLVQERSVVVPGEALAHGMDFLPGDNAYREKDQIYSKVLGLVSVSGRVIKITPLSGPYLPKTEDKIIARVMDITISGWRFETATAYSAMLNVRDATTRFVKKEEDLSQILAIGDYAVVKIVNVTSQNLIDLTMKEPGLRKITGGRIISINSQKVPRVIGRQGSMISLIKDKTGCDITVGQNGLIWIKGTPEGEARAEKAIKLIEAKSHLEGLTEKMEKFLGEN*