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ACD22_58

Alias: ACD22_13902.18214.18

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD22_58_1

Not on your lists

comp(248..460)
DNA (213bp) protein (71aa)
seg (db=Seg db_id=seg from=20 to=37)
seg (db=Seg db_id=seg from=40 to=67)
Uncharacterized protein {ECO:0000313|EMBL:EKE00423.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_58_2

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462..1364
DNA (903bp) protein (301aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=187)
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=210)
seg (db=Seg db_id=seg from=6 to=34)
ACD22_58_3

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comp(1487..2092)
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0I2_9GAMM (db=UNIREF evalue=2.0e-11 bit_score=72.0 identity=27.33 coverage=71.2871287128713)
TPR repeat-containing methylase UbiE (db=KEGG evalue=3.0e-11 bit_score=71.6 identity=27.84 coverage=68.8118811881188)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=67 to=199 evalue=2.7e-13)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=58 to=118 evalue=4.1e-08 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
ACD22_58_4

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comp(2169..2645)
DNA (477bp) protein (159aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
Uncharacterized protein {ECO:0000313|EMBL:EKE00426.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD22_13902.18214.18G0004,ACD22_13902.18214.18_4,ACD22_C00058G00004 id=23115 tax=ACD22 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=WWE3 organism_desc=WWE3
ACD22_58_5

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2741..3772
DNA (1032bp) protein (344aa)
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=28)
seg (db=Seg db_id=seg from=4 to=16)
LytR_cpsA_psr (db=HMMPfam db_id=PF03816 from=87 to=236 evalue=3.6e-31 interpro_id=IPR004474 interpro_description=Cell envelope-related transcriptional attenuator)
ACD22_58_6
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(3897..4514)
DNA (618bp) protein (206aa)
3897..4514 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RBG_16_WWE3_37_10_curated
ACD22_58_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(4898..6211)
DNA (1314bp) protein (438aa)
hypothetical protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=91 to=397 evalue=9.6e-30)
Radical_SAM (db=HMMPfam db_id=PF04055 from=101 to=265 evalue=5.5e-11 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
radical SAM domain-containing protein; K06871 alias=ACD22_13902.18214.18G0007,ACD22_13902.18214.18_7,ACD22_C00058G00007 id=23123 tax=ACD22 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=WWE3 organism_desc=WWE3
ACD22_58_8

Not on your lists

comp(6687..7211)
DNA (525bp) protein (175aa)
seg (db=Seg db_id=seg from=90 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
LysM (db=HMMPfam db_id=PF01476 from=121 to=174 evalue=3.3e-06 interpro_id=IPR018392 interpro_description=Peptidoglycan-binding lysin domain GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
no description (db=HMMSmart db_id=SM00257 from=120 to=174 evalue=0.0092 interpro_id=IPR002482 interpro_description=Peptidoglycan-binding Lysin subgroup GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
ACD22_58_9

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7431..9197
DNA (1767bp) protein (589aa)
hypothetical protein
hypothetical protein
DNA polymerase beta family n=2 Tax=Dictyoglomus RepID=B5YFK0_DICT6 (db=UNIREF evalue=3.0e-119 bit_score=433.0 identity=40.87 coverage=96.2648556876061)
coiled-coil (db=Coil db_id=coil from=394 to=415 evalue=NA)
ACD22_58_10

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10344..11252
DNA (909bp) protein (303aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg (db=Seg db_id=seg from=51 to=63)
ACD22_58_11

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11270..11575
DNA (306bp) protein (102aa)
gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit (EC:6.3.5.-)
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=5 to=97 evalue=3.2e-18)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=6 to=99 evalue=4.1e-16 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
Glu-tRNAGln (db=HMMPfam db_id=PF02686 from=22 to=93 evalue=2.0e-10 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD22_58_12

Not on your lists

comp(11682..11822)
DNA (141bp) protein (47aa)
11682..11822 - (rbs_motif=TACAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE00419.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_58_13

Not on your lists

comp(12015..12251)
DNA (237bp) protein (79aa)
seg (db=Seg db_id=seg from=54 to=66)
Uncharacterized protein {ECO:0000313|EMBL:EKE00420.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD22_58_14

Not on your lists

13075..13473
DNA (399bp) protein (133aa)
13075..13473 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE00413.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD22_58_15

Not on your lists

13478..14797
DNA (1320bp) protein (440aa)
hypothetical protein
hypothetical protein
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Halothermothrix orenii H 168 RepID=B8D126_HALOH (db=UNIREF evalue=3.0e-100 bit_score=369.0 identity=42.62 coverage=97.7272727272727)
GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED (db=HMMPanther db_id=PTHR11659 from=18 to=439 evalue=2.5e-118 interpro_id=IPR017959 interpro_description=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO=Biological Process: translation (GO:0006412), Molecular Function: carbon-nitrogen ligase activity, with glutamine as amido-N-donor (GO:0016884))
ACD22_58_16

Not on your lists

15235..17061
DNA (1827bp) protein (609aa)
hypothetical protein
hypothetical protein
DNA polymerase I n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ARA6_RUBXD (db=UNIREF evalue=3.0e-91 bit_score=340.0 identity=36.82 coverage=90.1477832512315)
seg (db=Seg db_id=seg from=22 to=34)
ACD22_58_17

Not on your lists

17116..18252
DNA (1137bp) protein (379aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=298 to=342 evalue=NA)
CLPAB_1 (db=PatternScan db_id=PS00870 from=180 to=192 evalue=0.0 interpro_id=IPR018368 interpro_description=Chaperonin ClpA/B, conserved site GO=Molecular Function: ATP binding (GO:0005524))
ATP-DEPENDENT CLP PROTEASE (db=HMMPanther db_id=PTHR11638 from=39 to=379 evalue=9.9e-179)
Displaying 17 items

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