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rifcsplowo2_12_scaffold_9952

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_12_scaffold_9952_1
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(2..391)
-----------------
DNA (390bp)
protein (130aa)
hypothetical protein; K09150 hypothetical protein Tax=CG_Woesearch_01
hypothetical protein; K09150 hypothetical protein id=5043729 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_12_scaffold_9952_2
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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475..852
-----------------
DNA (378bp)
protein (126aa)
MarR family transcriptional regulator (EC:2.7.1.161)
Riboflavin kinase {ECO:0000256|HAMAP-Rule:MF_01285}; Short=RFK {ECO:0000256|HAMAP-Rule:MF_01285};; EC=2.7.1.161 {ECO:0000256|HAMAP-Rule:MF_01285};; CTP-dependent riboflavin kinase {ECO:0000256|HAMAP-R
Riboflavin kinase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDY3_ARCPA
rifcsplowo2_12_scaffold_9952_3
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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1117..1587
-----------------
DNA (471bp)
protein (157aa)
ribC; riboflavin synthase subunit alpha (EC:2.5.1.-)
Riboflavin synthase {ECO:0000256|PIRNR:PIRNR015750}; EC=2.5.1.9 {ECO:0000256|PIRNR:PIRNR015750};; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Met
Riboflavin synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IAL4_METCZ
rifcsplowo2_12_scaffold_9952_4
Sulfolobales archaeon AZ1, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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1635..2045
-----------------
DNA (411bp)
protein (137aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C2D5_9CREN
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
rifcsplowo2_12_scaffold_9952_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2040..3014)
-----------------
DNA (975bp)
protein (325aa)
qor; quinone oxidoreductase (EC:1.6.5.5) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UTC6_ROSS1
alcohol dehydrogenase
rifcsplowo2_12_scaffold_9952_6
AR11, Woesearchaeaota, DPANN, Archaea

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comp(3056..3832)
-----------------
DNA (777bp)
protein (259aa)
Tax=AR11
rifcsplowo2_12_scaffold_9952_7
unknown

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comp(3927..4328)
-----------------
DNA (402bp)
protein (134aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_8
unknown

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comp(4339..4578)
-----------------
DNA (240bp)
protein (80aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_9
unknown

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comp(4600..5274)
-----------------
DNA (675bp)
protein (225aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_10
unknown

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comp(5298..5723)
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_11
unknown

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comp(5825..6076)
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_12

Not on your lists

6205..6366
-----------------
DNA (162bp)
protein (54aa)
transcriptional regulator TrmB id=5047425 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcriptional regulator TrmB {ECO:0000313|EMBL:KHO45243.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
rifcsplowo2_12_scaffold_9952_13
AR18, Woesearchaeaota, DPANN, Archaea

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6387..6833
-----------------
DNA (447bp)
protein (149aa)
TrmB family transcriptional regulator id=5044157 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
TrmB family transcriptional regulator Tax=AR18
rifcsplowo2_12_scaffold_9952_14
CG_OP9-01, Atribacteria, Bacteria

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comp(6850..7272)
-----------------
DNA (423bp)
protein (141aa)
Uncharacterized protein n=2 Tax=Desulfotomaculum RepID=F0DKY1_9FIRM
hypothetical protein; K06934 Tax=CG_OP9-01
hypothetical protein
rifcsplowo2_12_scaffold_9952_15

Not on your lists

comp(7367..8086)
-----------------
DNA (720bp)
protein (240aa)
Putative membrane-associated protein/domain protein id=5799953 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61284.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
putative membrane-associated protein/domain protein
rifcsplowo2_12_scaffold_9952_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

8363..10123
-----------------
DNA (1761bp)
protein (587aa)
hypothetical protein Tax=CG_Woesearch_02
Putative uncharacterized protein id=5799954 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_12_scaffold_9952_17
unknown

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10204..10464
-----------------
DNA (261bp)
protein (87aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_18
AR15, Woesearchaeaota, DPANN, Archaea

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10507..11604
-----------------
DNA (1098bp)
protein (366aa)
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase id=5800817 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RNA 3'-terminal phosphate cyclase Tax=AR15
rifcsplowo2_12_scaffold_9952_19

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11834..12112
-----------------
DNA (279bp)
protein (93aa)
Elongation factor 1-beta n=2 Tax=Methanobacterium RepID=K2RST2_METFO id=5103134 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Elongation factor 1-beta
Elongation factor 1-beta {ECO:0000256|HAMAP-Rule:MF_00043, ECO:0000256|SAAS:SAAS00044427}; Short=EF-1-beta {ECO:0000256|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000256|HAMAP-Rule:MF_00043}; TaxID=157937
rifcsplowo2_12_scaffold_9952_20
Thermococcus gammatolerans, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(12119..12883)
-----------------
DNA (765bp)
protein (255aa)
Serine/threonine protein kinase {ECO:0000313|EMBL:ACS33470.1}; EC=2.7.11.1 {ECO:0000313|EMBL:ACS33470.1};; TaxID=593117 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; T
rifcsplowo2_12_scaffold_9952_21
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12918..13979)
-----------------
DNA (1062bp)
protein (354aa)
N(2),N(2)-dimethylguanosine tRNA methyltransferase; K00555 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] Tax=AR11
tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase id=5800001 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase
rifcsplowo2_12_scaffold_9952_22
unknown

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comp(14025..14393)
-----------------
DNA (369bp)
protein (123aa)

This feature has no annotations

rifcsplowo2_12_scaffold_9952_23

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14510..16267
-----------------
DNA (1758bp)
protein (586aa)
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Probable translation initiation factor IF-2 id=5800003 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
putative translation initiation factor IF-2
rifcsplowo2_12_scaffold_9952_24
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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16317..16562
-----------------
DNA (246bp)
protein (82aa)
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
Putative uncharacterized protein id=5800004 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying 24 items

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