ggKbase home page

rifcsplowo2_02_scaffold_3720_2

Organism: RIFCSPLOWO2_02_FULL_Archaea_Pacearchaeota_30_10

near complete RP 31 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 31 / 38 MC: 3
Location: 1002..1676

Top 3 Functional Annotations

Value Algorithm Source
RNA-associated protein; K14574 ribosome maturation protein SDO1 Tax=CG_Pacearch_05 similarity UNIPROT
DB: UniProtKB
  • Identity: 49.1
  • Coverage: 224.0
  • Bit_score: 243
  • Evalue 2.10e-61
RNA-associated protein; K14574 ribosome maturation protein SDO1 id=5046928 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b similarity UNIREF
DB: UNIREF100
  • Identity: 37.6
  • Coverage: 221.0
  • Bit_score: 175
  • Evalue 8.50e-41
rRNA metabolism protein, SBDS family similarity KEGG
DB: KEGG
  • Identity: 39.7
  • Coverage: 224.0
  • Bit_score: 173
  • Evalue 6.90e-41

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Pacearch_05 → Pacearchaeota → Archaea

Sequences

DNA sequence
Length: 675
ATGACAGACACAGTAGCAAGATTCAGGAGCGGAAAAATAATTTTTGAAACTGTTGTTGATTTAGAAAATGCAATAAAGTTAAAACATGGAGAAAACGTTGATATTAATGATGTTATACGAGACGTGGCTGTTTACACTGACCAGAAAAAAGGCATGAGGGCTGGAAATGCTGAATTAAAAAATGTTTTTGGGACAACTGAACTTCAAAAAGTTGTTGAACAAATTGTTAAAAAAGGTAATATAGAAGTTATCCAAGAATTTAGAGATGAGAAATTAGAAGCTAAAAGAAAACAAGTAATAGATTTTTTGTCTCGAAATGCAATTGATGTCAGAACAGGGAGACCATTTACTCCTGATATTATTGAGAAAGCTATAAAAGAAGCTAAAGTTAATGTTCAGGATAAACCATTAGAAAGACAAATGCCAGACATTATCGAGAAATTAAAAAAAATTATACCATTAAAAATTGAGACTAAAAGAATTAAAGTTAGAATTCCTTCGCTTTATACAGGAAGAGTTTATGGCTTAATCCAGGAACACAAAGAAAAAGAAGAATGGTTTTCTAACGGAGATTTAGAAGTAATTCTAAGCATTCCTGTTGGCATGCTAATGGATTTTTATGATAAATTAAATGCAGTTACTCATGGAAGTGCGTTAACAGAAGAGATGAAATAA
PROTEIN sequence
Length: 225
MTDTVARFRSGKIIFETVVDLENAIKLKHGENVDINDVIRDVAVYTDQKKGMRAGNAELKNVFGTTELQKVVEQIVKKGNIEVIQEFRDEKLEAKRKQVIDFLSRNAIDVRTGRPFTPDIIEKAIKEAKVNVQDKPLERQMPDIIEKLKKIIPLKIETKRIKVRIPSLYTGRVYGLIQEHKEKEEWFSNGDLEVILSIPVGMLMDFYDKLNAVTHGSALTEEMK*