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rifcsplowo2_02_scaffold_3720

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_3720_1
CG_Pacearch_05, Pacearchaeota, Archaea

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222..944
-----------------
DNA (723bp)
protein (241aa)
proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=CG_Pacearch_05
Proteasome subunit alpha n=3 Tax=Thermococcus RepID=PSA_THESM id=5103842 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Proteasome subunit alpha
rifcsplowo2_02_scaffold_3720_2
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists


1002..1676
-----------------
DNA (675bp)
protein (225aa)
RNA-associated protein; K14574 ribosome maturation protein SDO1 Tax=CG_Pacearch_05
RNA-associated protein; K14574 ribosome maturation protein SDO1 id=5046928 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rRNA metabolism protein, SBDS family
rifcsplowo2_02_scaffold_3720_3

Not on your lists

1678..1995
-----------------
DNA (318bp)
protein (106aa)
Carbon storage regulator homolog n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SMV6_PLABD
carbon storage regulator CsrA
Carbon storage regulator-like protein {ECO:0000313|EMBL:KKT92890.1}; TaxID=1618832 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_45_14.;"
rifcsplowo2_02_scaffold_3720_4
unknown

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2028..2378
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_5
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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2380..2715
-----------------
DNA (336bp)
protein (112aa)
Carbon storage regulator homolog {ECO:0000256|HAMAP-Rule:MF_00167}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.
rifcsplowo2_02_scaffold_3720_6
CG_Pacearch_02, Pacearchaeota, Archaea

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2712..3413
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003632410
exosome complex RNA-binding protein Rrp4; K03679 exosome complex component RRP4 Tax=CG_Pacearch_02
exosome complex RNA-binding protein Rrp4
rifcsplowo2_02_scaffold_3720_7
unknown

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3398..3844
-----------------
DNA (447bp)
protein (149aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_8
unknown

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3846..4205
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_9
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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4207..4914
-----------------
DNA (708bp)
protein (236aa)
exosome complex exonuclease Rrp41 n=1 Tax=Thermococcus zilligii AN1 RepID=UPI000299EC77 id=5103845 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_13_Pacearchaeota_36_9_curated
exosome complex exonuclease Rrp41
rifcsplowo2_02_scaffold_3720_10
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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4917..5720
-----------------
DNA (804bp)
protein (268aa)
Ribosomal RNA-processing protein RRP42 n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BIN3_9EURY id=5103846 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rrp42; exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_13_Pacearchaeota_36_9_curated
Ribosomal RNA-processing protein RRP42
rifcsplowo2_02_scaffold_3720_11
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

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5750..6274
-----------------
DNA (525bp)
protein (175aa)
Tax=BJP_IG2158_OD1_28_51
rifcsplowo2_02_scaffold_3720_12

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6276..6755
-----------------
DNA (480bp)
protein (160aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S0K9_9FLAO
Marine sediment metagenome DNA, contig: S01H1_S05152 {ECO:0000313|EMBL:GAF96255.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_02_scaffold_3720_13
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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7013..7441
-----------------
DNA (429bp)
protein (143aa)
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] Tax=RBG_13_Pacearchaeota_36_9_curated
DNA-directed RNA polymerase subunit K; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=5045738 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_02_scaffold_3720_14
unknown

Not on your lists

7438..7617
-----------------
DNA (180bp)
protein (60aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_15
unknown

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7806..9068
-----------------
DNA (1263bp)
protein (421aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_16
unknown

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comp(9075..10160)
-----------------
DNA (1086bp)
protein (362aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_17
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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comp(10408..11217)
-----------------
DNA (810bp)
protein (270aa)
30S ribosomal protein S2 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS2_NANEQ id=5102942 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RBG_13_Pacearchaeota_36_9_curated
30S ribosomal protein S2
rifcsplowo2_02_scaffold_3720_18
unknown

Not on your lists

11403..12194
-----------------
DNA (792bp)
protein (264aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_19
unknown

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12287..12667
-----------------
DNA (381bp)
protein (127aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_20
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12718..13284
-----------------
DNA (567bp)
protein (189aa)
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
Methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase id=2892897 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
rifcsplowo2_02_scaffold_3720_21
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13277..14281
-----------------
DNA (1005bp)
protein (335aa)
msrAB; protein MsrAB (EC:1.8.4.13); K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] Tax=RBG_16_Deltaproteobacteria_54_11_curated
Methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase id=4705368 bin=GWC2_OP3_44_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
methionine-R-sulfoxide reductase/methionine-S-sulfoxide reductase
rifcsplowo2_02_scaffold_3720_22
unknown

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14331..14987
-----------------
DNA (657bp)
protein (219aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_23
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(14989..15456)
-----------------
DNA (468bp)
protein (156aa)
NUDIX hydrolase Tax=CG_Pacearch_03
NUDIX hydrolase id=2622930 bin=GWF2_Ignavibacteria_35_20 species=Gordonia malaquae genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
NUDIX hydrolase
rifcsplowo2_02_scaffold_3720_24
unknown

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comp(15487..15783)
-----------------
DNA (297bp)
protein (99aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_25
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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15833..16345
-----------------
DNA (513bp)
protein (171aa)
Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_02_scaffold_3720_26
unknown

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16406..16969
-----------------
DNA (564bp)
protein (188aa)

This feature has no annotations

rifcsplowo2_02_scaffold_3720_27
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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17031..18512
-----------------
DNA (1482bp)
protein (494aa)
Putative uncharacterized protein n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GV01_9EURY id=5103723 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_02_scaffold_3720_28
unknown

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18577..18750
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

Displaying 28 items

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