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13_1_20cm_4_scaffold_3921_3

Organism: 13_1_20CM_4_Verrucomicrobia_54_11

near complete RP 42 / 55 MC: 3 BSCG 44 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(2459..3001)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=497964 species="Ba UNIPROT
DB: UniProtKB
  • Identity: 48.0
  • Coverage: 175.0
  • Bit_score: 178
  • Evalue 1.10e-41
2'-5' RNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D614_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 175.0
  • Bit_score: 178
  • Evalue 8.00e-42
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 40.8
  • Coverage: 169.0
  • Bit_score: 151
  • Evalue 3.00e-34

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 543
ATGCCCAAGCGTCTCTTCGTCGCGATCGATCTGCCCGAGTCAACGCGTCAGTTGCTTGCAGGTATTGATCCGCACATTCGCGGTGTGCGCTGGGTCGATACGGCTCAAATGCATCTAACGATCAGTTTCTTTGGCGATGTGCCGAACGATATCGGTCTTGCGGTGCGGGAAAAACTCAGTGCGATCGAGTTCGGCGCCTTCTTCCTGCCCATTGTTGGCGTCGGGACCTTTTCCGCAAAGAGGACTCCGAAAATTATCTGGATCAGCGTCGGGAAAGCGCACCCGCATCTGTTCCAAATTCACAAGCGCGTGCAGGAAGCCGCGCTCGCTGCCGGGCTCGAGCCAGAACTTAAACCATGGCATCCGCACATAACGATCGCGCGCTGCCGCGACGTGTCCGCGCAATCGCTCCGAAAGTTTTTGCAGTCGAATGCCGAGTTCGATGCAGGAATGATCCGGGTCCAGGATTTCCATCTTTATTCGAGCAAGCTCACATCTGCGGGTCCAATTCACACGCGCGAGCTCACCGTATCGGCTACGTAA
PROTEIN sequence
Length: 181
MPKRLFVAIDLPESTRQLLAGIDPHIRGVRWVDTAQMHLTISFFGDVPNDIGLAVREKLSAIEFGAFFLPIVGVGTFSAKRTPKIIWISVGKAHPHLFQIHKRVQEAALAAGLEPELKPWHPHITIARCRDVSAQSLRKFLQSNAEFDAGMIRVQDFHLYSSKLTSAGPIHTRELTVSAT*