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13_1_20cm_4_scaffold_12428_13

Organism: 13_1_20CM_4_Actinobacteria_68_12

partial RP 8 / 55 BSCG 11 / 51 ASCG 6 / 38
Location: comp(5363..6064)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma 70 n=1 Tax=Patulibacter americanus RepID=UPI0003B5C1FE similarity UNIREF
DB: UNIREF100
  • Identity: 51.5
  • Coverage: 239.0
  • Bit_score: 225
  • Evalue 4.30e-56
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RBG_16_Actinobacteria_68_12_curated UNIPROT
DB: UniProtKB
  • Identity: 60.1
  • Coverage: 228.0
  • Bit_score: 270
  • Evalue 2.80e-69
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 57.3
  • Coverage: 192.0
  • Bit_score: 221
  • Evalue 3.00e-55

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Taxonomy

RBG_16_Actinobacteria_68_12_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 702
GTGAAAGGAATCACCATCAGCACCACTTTGCAAACCCCTGAAATCCAGACATTGCTCGAGGCCTCCGAAGAGGAGCTCGAGGCGTCTGAGAACGGCACGTTCGAGGCCGAGGCGCTGCCCGCTTCCGCGGACTCGCTCGAGCTGTTCATGAACGAGATCGGCCGCTATCCGCTGCTGACCGCGGCGGAGGAAGTCGCGCTGGCGAAGCGCGTCGAGCGCGGCGACCGCGCGGCCAAGGAGCGGATGATCAACTCGAATCTCCGGCTGGTCGTCCACGTCGCCAAGCGGTATCGCGGACACGGCGTTCCGTTCGGCGACCTGATCCAGGACGGCGTGATTGGGCTCAACCGGGCGGTCGAGAAGTTCGACTGGCGGAAGGGCTTCAAGTTCTCGACCTACGCCACCTGGTGGATCCGCCAAGCCGTGCAGCGATCCGTCGCCGGACAGGCGCGGACGATCCGCGTGCCCACGCACGTGCACGAGCGCCGGCAGACGCTCAATAGGCACGCGCGGAAGCTCGAGACGGACCTCGGCCGGCCGCCGACGCACAAGGAGCTCGCGAAGGCGAGCGGCCTGAAGCTGCAGCACGTCGCCGAGGCGCTCTCGGTCCCCGAGGCCCGAGCCTCGCTGAACTCGCCGGTCGGCGACGAGGACGGAAGCGAGTTCGGAGATCTCTTCGCCGACACGACCGCCTCGAGCTGA
PROTEIN sequence
Length: 234
VKGITISTTLQTPEIQTLLEASEEELEASENGTFEAEALPASADSLELFMNEIGRYPLLTAAEEVALAKRVERGDRAAKERMINSNLRLVVHVAKRYRGHGVPFGDLIQDGVIGLNRAVEKFDWRKGFKFSTYATWWIRQAVQRSVAGQARTIRVPTHVHERRQTLNRHARKLETDLGRPPTHKELAKASGLKLQHVAEALSVPEARASLNSPVGDEDGSEFGDLFADTTASS*