ggKbase home page

13_1_40cm_3_scaffold_13737

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_13737_1

Not on your lists

1..153
DNA (153bp) protein (51aa)
Marine sediment metagenome DNA, contig: S12H4_S03387 {ECO:0000313|EMBL:GAI91262.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_1_40cm_3_scaffold_13737_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(295..738)
DNA (444bp) protein (148aa)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TRW1_9CYAN
msrB; peptide methionine sulfoxide reductase MsrB Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
methionine-R-sulfoxide reductase
13_1_40cm_3_scaffold_13737_trna_1
unknown

Not on your lists

comp(783..856)
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_13737_3
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(847..1053)
DNA (207bp) protein (69aa)
30S ribosomal protein S27ae n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T568_9EURY
SSU ribosomal protein S27Ae Tax=RBG_16_Euryarchaeota_68_13_curated
30S ribosomal protein S27ae
13_1_40cm_3_scaffold_13737_4
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(1053..1580)
DNA (528bp) protein (176aa)
Ribosomal protein S24E n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7UA95_9EURY
rps24e; 30S ribosomal protein S24E; K02974 small subunit ribosomal protein S24e Tax=RBG_16_Euryarchaeota_67_27_curated
SSU ribosomal protein S24e
13_1_40cm_3_scaffold_13737_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1582..2127)
DNA (546bp) protein (182aa)
UPI0003D1C685 related cluster n=1 Tax=unknown RepID=UPI0003D1C685
hypothetical protein; K09735 hypothetical protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_3_scaffold_13737_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2093..2284)
DNA (192bp) protein (64aa)
DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035D5438
hypothetical protein
13_1_40cm_3_scaffold_13737_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists


comp(2289..2831)
DNA (543bp) protein (181aa)
DNA-directed RNA polymerase subunit E (EC:2.7.7.6) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
rpoE1; DNA-directed RNA polymerase subunit E' (EC:2.7.7.6)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036EEDE2
13_1_40cm_3_scaffold_13737_8
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

3047..3601
DNA (555bp) protein (185aa)
Tax=RBG_16_Chloroflexi_64_32_curated
13_1_40cm_3_scaffold_13737_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(3656..4936)
DNA (1281bp) protein (427aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RBG_16_Euryarchaeota_67_27_curated
K(+)-insensitive pyrophosphate-energized proton pump id=1737056 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Pyrophosphate-energized proton pump
13_1_40cm_3_scaffold_13737_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(4933..5820)
DNA (888bp) protein (296aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RBG_16_Euryarchaeota_68_12_curated
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
K(+)-insensitive pyrophosphate-energized proton pump n=1 Tax=Acetonema longum DSM 6540 RepID=F7NHS9_9FIRM
13_1_40cm_3_scaffold_13737_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5929..6375
DNA (447bp) protein (149aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_13737_12
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(6372..7604)
DNA (1233bp) protein (411aa)
phosphonopyruvate decarboxylase-related protein (EC:5.4.2.1); K15635 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
cofactor-independent phosphoglycerate mutase (EC:5.4.2.1)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037EE975
13_1_40cm_3_scaffold_13737_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7685..8470)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XKV8_METZD
hypothetical protein; K09134 hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_13737_14
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(8486..10630)
DNA (2145bp) protein (715aa)
Uncharacterized protein n=1 Tax=Trypanosoma cruzi (strain CL Brener) RepID=Q4DJQ1_TRYCC
hypothetical protein, unknown function Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_3_scaffold_13737_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

10786..11487
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BDY7_9BACT
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_3_scaffold_13737_16
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

11545..12609
DNA (1065bp) protein (355aa)
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10) Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
ivd; isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKL8_9BACT
Displaying 17 items

View Taxonomy