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13_1_40cm_3_scaffold_275

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_275_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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2..2272
-----------------
DNA (2271bp)
protein (757aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_275_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(2286..2660)
-----------------
DNA (375bp)
protein (125aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LA92_HALJP
Arginyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_275_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(2657..3976)
-----------------
DNA (1320bp)
protein (440aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000366B0B8
Arginyl-tRNA synthetase Tax=RBG_16_Euryarchaeota_68_12_curated
Arginyl-tRNA synthetase
13_1_40cm_3_scaffold_275_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(3978..4385)
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036CA000
peptide chain release factor 1; K03265 peptide chain release factor subunit 1 Tax=RBG_16_Euryarchaeota_68_12_curated
Eukaryotic peptide chain release factor subunit 1
13_1_40cm_3_scaffold_275_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(5368..5661)
-----------------
DNA (294bp)
protein (98aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_275_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(5777..5986)
-----------------
DNA (210bp)
protein (70aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_275_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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6030..6788
-----------------
DNA (759bp)
protein (253aa)
Putative uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T599_9EURY
putative uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase) Tax=RBG_16_Euryarchaeota_68_12_curated
putative uridylate kinase (UK) (Uridine monophosphate kinase) (UMP kinase)
13_1_40cm_3_scaffold_275_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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6799..7188
-----------------
DNA (390bp)
protein (130aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_3_scaffold_275_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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7193..7744
-----------------
DNA (552bp)
protein (184aa)
LigT; 2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037365A0
LigT; 2'-5' RNA ligase
13_1_40cm_3_scaffold_275_10
unknown

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comp(7741..8397)
-----------------
DNA (657bp)
protein (219aa)

This feature has no annotations

13_1_40cm_3_scaffold_275_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(8405..8854)
-----------------
DNA (450bp)
protein (150aa)
Putative uncharacterized protein n=2 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TAI6_ACIB4
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_275_12
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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9000..10256
-----------------
DNA (1257bp)
protein (419aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=RBG_16_Euryarchaeota_68_12_curated
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9UZQ6_PYRAB
13_1_40cm_3_scaffold_275_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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10553..11413
-----------------
DNA (861bp)
protein (287aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036C546F
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
hypothetical protein
13_1_40cm_3_scaffold_275_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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11455..12759
-----------------
DNA (1305bp)
protein (435aa)
Amine oxidase n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GGN9_METPE
amine oxidase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
amine oxidase
13_1_40cm_3_scaffold_275_15
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

12756..13460
-----------------
DNA (705bp)
protein (235aa)
Glycosyl transferase n=1 Tax=uncultured archaeon GZfos35A2 RepID=Q649I4_9ARCH
glycosyl transferase family protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
hypothetical protein
13_1_40cm_3_scaffold_275_16
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(13457..14008)
-----------------
DNA (552bp)
protein (184aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000369BD15
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_3_scaffold_275_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(14090..15004)
-----------------
DNA (915bp)
protein (305aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFH6_ACIB4
FKBP-type peptidyl-prolyl cis-trans isomerase Tax=RBG_16_Euryarchaeota_68_12_curated
FKBP-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_3_scaffold_275_18
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(15303..16511)
-----------------
DNA (1209bp)
protein (403aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00036840DE
proteasome-activating nucleotidase Tax=RBG_16_Euryarchaeota_68_13_curated
proteasome-activating nucleotidase
13_1_40cm_3_scaffold_275_19
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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16588..17088
-----------------
DNA (501bp)
protein (167aa)
Helix-turn-helix domain protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8S4_9EURY
helix-turn-helix domain protein Tax=RBG_16_Euryarchaeota_67_27_curated
helix-turn-helix domain protein
13_1_40cm_3_scaffold_275_20
unknown

Not on your lists

17085..17351
-----------------
DNA (267bp)
protein (89aa)

This feature has no annotations

13_1_40cm_3_scaffold_275_21
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

comp(17343..17807)
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI0003601847
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_3_scaffold_275_22
RBG_13_Euryarchaeota_57_23_curated, Euryarchaeota, Archaea

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comp(17804..18583)
-----------------
DNA (780bp)
protein (260aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YCY7_9ZZZZ
Tax=RBG_13_Euryarchaeota_57_23_curated
13_1_40cm_3_scaffold_275_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(18580..26082)
-----------------
DNA (7503bp)
protein (2501aa)
hypothetical protein Tax=RBG_16_Euryarchaeota_68_12_curated
Putative mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (Pilus type IV) id=4278837 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_3_scaffold_275_24
unknown

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comp(26084..26326)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

13_1_40cm_3_scaffold_275_25
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(26893..28335)
-----------------
DNA (1443bp)
protein (481aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
13_1_40cm_3_scaffold_275_26
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(28421..29611)
-----------------
DNA (1191bp)
protein (397aa)
putative cell wall surface anchor family protein
Putative cell wall surface anchor family protein {ECO:0000313|EMBL:AIC14283.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;"
Displaying 26 items

View Taxonomy