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SCNpilot_BF_INOC_scaffold_1648_15

Organism: SCNpilot_BF_INOC_Clostridium_42_5_partial

partial RP 46 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 3
Location: 15404..16633

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WJB2_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 33.1
  • Coverage: 405.0
  • Bit_score: 187
  • Evalue 2.30e-44
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDD04216.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental sample similarity UNIPROT
DB: UniProtKB
  • Identity: 33.1
  • Coverage: 405.0
  • Bit_score: 187
  • Evalue 3.20e-44
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 30.5
  • Coverage: 377.0
  • Bit_score: 160
  • Evalue 1.10e-36

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Taxonomy

Ruminococcus sp. CAG:382 → Ruminococcus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1230
ATGCAAGAAAAAGAGGAGTTGTTACAGGAATACATGCCCAAAATATTCCGTTATGCCGCCGGTCATACGGCAAGTCTGCAGGATGCGGAAGACCTGACACAAGATATTTTTGTGAAGATTTTGACTGCGTTTTCAAAAAAGCAAATTCCTCAGCATCTGAATGCATGGATTTGGAGAGTGGCAGGCAATACACTGATTGACAAGTACAGAAGAGATGCGTACCGAAAGGTTGTTTTCGGTATTCCTGAAACCATACAAGACTGCAAAGTGAATACAGAAGATGATTTGGAGCTGGCAAGTGATATCAATACATTGAGACGGGAGCTGGCTTTTTTAACAAAGGCAAGGCGGGAAATTACCATACTGCATTATATCAATGAATATACTGTGGGCGAGATTGCTAGCATGCTTGGGCTGCCCTCCGGCACAGTAAAATGGCACCTGTCGGGTGCTAGAACCGAACTGATGAAAGGAATGGACCGAATGAGAACCTTTGGTGAAAAAAGCTATAAACCGCAAAAGCTTACCATCGGCATCTATGGGAATATTGGTACCGCCGGGGAACCCCTTTGTTATGTAACAAGAGCATTGCCACAAAATATACTGCTGGCGGCATATAAGAAGCCCTTGACGATGGAGGAACTCTGCGAAGAGCTGGGTGTTTCTGCGCCGTATATAGAGGATGAGACAGAAAGACTGGTCAAAAGTGAGCTTTTGTGTAAACGGGGTAAAAAGTATATGACCGATTTTCCCATCGCATTGACAGAGGATGTGTTCGCCATTGCCGAAATTGTGATTGGTGAAGCTGAACGGTTTTGTGAAATTCTGGTGAAAGGCGTCAGAGAACGTCTGGAAAGAATCAAAAAAATTGATTTTTGGAAAGCTGCCTGCTCGGACAATCAGCTCATGTGGATTTTTGTCATTCAAACCGCAACGGAATTTTTTCGTTCCCTTCAGGAAAACACATTTGATGATATGGCCATCCCTGTCAGAGAAAACGGTGGACGGTGGTATGCGTTGGGAACAAGTGTGGATGATCAGGTGGCAGAGCAGATCATCAGAAAAAGTGGAAGGCGGGAGGAGGAATATAACCTGACACTGAGCGGACCGATGATGGAATGGAATGATCAATATACATTTTTTATGGTGGATACAAGATGGAGCAAGGCTAGAATCAATCATGATGATATTATCTCAAAAAAAGAAACATGGTTTCAAGCCTGCCGCTGA
PROTEIN sequence
Length: 410
MQEKEELLQEYMPKIFRYAAGHTASLQDAEDLTQDIFVKILTAFSKKQIPQHLNAWIWRVAGNTLIDKYRRDAYRKVVFGIPETIQDCKVNTEDDLELASDINTLRRELAFLTKARREITILHYINEYTVGEIASMLGLPSGTVKWHLSGARTELMKGMDRMRTFGEKSYKPQKLTIGIYGNIGTAGEPLCYVTRALPQNILLAAYKKPLTMEELCEELGVSAPYIEDETERLVKSELLCKRGKKYMTDFPIALTEDVFAIAEIVIGEAERFCEILVKGVRERLERIKKIDFWKAACSDNQLMWIFVIQTATEFFRSLQENTFDDMAIPVRENGGRWYALGTSVDDQVAEQIIRKSGRREEEYNLTLSGPMMEWNDQYTFFMVDTRWSKARINHDDIISKKETWFQACR*