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SCNpilot_BF_INOC_scaffold_1648

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_1648_1
Paenibacillus dendritiformis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3..2240
DNA (2238bp) protein (746aa)
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SI28_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EHQ61279.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
hypothetical protein
SCNpilot_BF_INOC_scaffold_1648_2
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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2771..3658
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HI62_9CLOT
phosphate ABC transporter periplasmic component-like protein
Tax=BJP_IG2102_Clostridiales_34_350
SCNpilot_BF_INOC_scaffold_1648_3
unknown

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3660..4211
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_4
unknown

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4268..4972
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_5
unknown

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5030..5179
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_6
unknown

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5142..6314
DNA (1173bp) protein (391aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6442..7197)
DNA (756bp) protein (252aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C3_9CLOT
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEG32288.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium]
DeoR family transcriptional regulator
SCNpilot_BF_INOC_scaffold_1648_8
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7347..8612
DNA (1266bp) protein (422aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminicl
L-rhamnose isomerase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C2_9CLOT
L-rhamnose isomerase
SCNpilot_BF_INOC_scaffold_1648_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8596..9285
DNA (690bp) protein (230aa)
fucA; L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose phosphate aldolase n=6 Tax=Clostridium perfringens RepID=Q0TS93_CLOP1
Fuculose phosphate aldolase {ECO:0000313|EMBL:KJU71128.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
SCNpilot_BF_INOC_scaffold_1648_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9300..10775
DNA (1476bp) protein (492aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.5 2.7.1.51)
Sugar (Pentulose and hexulose) kinases n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I5F5_9FIRM
Sugar (Pentulose and hexulose) kinases {ECO:0000313|EMBL:CDB41724.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" so
SCNpilot_BF_INOC_scaffold_1648_11
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10918..12117)
DNA (1200bp) protein (400aa)
Major facilitator superfamily MFS_1 n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DEQ5_CLOTH
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABN52434.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium ther
SCNpilot_BF_INOC_scaffold_1648_12
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12305..13075
DNA (771bp) protein (257aa)
RNA polymerase sigma factor n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LTH7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis
sigma-B/F/G subfamily RNA polymerase sigma-28 factor
SCNpilot_BF_INOC_scaffold_1648_13

Not on your lists

13302..13940
DNA (639bp) protein (213aa)
Putative phosphatase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UBR3_9CLOT
Marine sediment metagenome DNA, contig: S01H4_L06570 {ECO:0000313|EMBL:GAG79523.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
phosphatase
SCNpilot_BF_INOC_scaffold_1648_14
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14035..15240
DNA (1206bp) protein (402aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia;
ackA; Acetate kinase (EC:2.7.2.1) rbh
Acetate kinase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I6S0_9FIRM
SCNpilot_BF_INOC_scaffold_1648_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15404..16633
DNA (1230bp) protein (410aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6WJB2_9FIRM
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDD04216.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental sample
sigma-70 family RNA polymerase sigma factor
SCNpilot_BF_INOC_scaffold_1648_16
unknown

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16612..17028
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_1648_17
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17137..17760
DNA (624bp) protein (208aa)
Helix-turn-helix domain protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SGC1_9CLOT
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDC60198.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clo
helix-turn-helix domain-containing protein
SCNpilot_BF_INOC_scaffold_1648_18
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17962..18849
DNA (888bp) protein (296aa)
DegV family protein n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SVK7_SYNGF
degV family protein
DegV family protein {ECO:0000313|EMBL:ADY54483.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strai
SCNpilot_BF_INOC_scaffold_1648_19
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19253..23038
DNA (3786bp) protein (1262aa)
wapA1; tRNA(Glu)-specific nuclease WapA (EC:3.1.-.-)
Putative cell wall associated protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EHN0_CLOPA
Pretoxin HINT domain protein {ECO:0000313|EMBL:CDE90341.1}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostr
Displaying 19 items

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