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ACD24_276

Alias: ACD24_414896.3235.4

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_276_1

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28..639
DNA (612bp) protein (204aa)
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=94 to=118 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=203 evalue=3.4e-90 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=203 evalue=2.2e-62)
ACD24_276_2

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675..1592
DNA (918bp) protein (306aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
coiled-coil (db=Coil db_id=coil from=65 to=86 evalue=NA)
seg (db=Seg db_id=seg from=75 to=86)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=17 to=300 evalue=7.1e-116 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD24_276_3
GWA2_OP11_40_7, Woesebacteria, Microgenomates, Bacteria

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1670..2191
DNA (522bp) protein (174aa)
rplQ; 50S ribosomal protein L17
seg (db=Seg db_id=seg from=149 to=166)
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=112 evalue=9.2e-25)
ACD24_276_4

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2188..2604
DNA (417bp) protein (139aa)
rplM; 50S ribosomal protein L13
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=4 to=135 evalue=2.3e-57 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545:SF2 from=4 to=136 evalue=7.3e-48 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545 from=4 to=136 evalue=7.3e-48 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_276_5

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2612..3085
DNA (474bp) protein (158aa)
rpsI; 30S ribosomal protein S9
seg (db=Seg db_id=seg from=10 to=26)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=28 to=157 evalue=6.8e-30 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=34 to=157 evalue=1.8e-29 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_276_6

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3136..3267
DNA (132bp) protein (44aa)
LacAB_rpiB (db=HMMPfam db_id=PF02502 from=3 to=38 evalue=2.3e-06 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
Uncharacterized protein {ECO:0000313|EMBL:EKD95724.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 6 items

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