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scnpilot_cont_500_p_scaffold_1173

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Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_1173_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1720
DNA (1719bp) protein (573aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein n=1 Tax=Rhizobium sp. CF080 RepID=J2KL75_9RHIZ rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGD87350.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizo
oppD; Oligopeptide-transport ATP-binding protein ABC transporter OppD
scnpilot_cont_500_p_scaffold_1173_2
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1877..2818
DNA (942bp) protein (314aa)
Monosaccharide-transporting ATPase n=1 Tax=Burkholderia sp. H160 RepID=B5WMI4_9BURK
branched-chain amino acid transport system / permease component family protein
Branched-chain amino acid transport system / permease component family protein {ECO:0000313|EMBL:AJZ58036.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
scnpilot_cont_500_p_scaffold_1173_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2857..3816
DNA (960bp) protein (320aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) RepID=D2C551_THENR
monosaccharide ABC transporter substrate-binding protein, CUT2 family; K10439 ribose transport system substrate-binding protein Tax=RBG_16_Betaproteobacteria_64_18_curated
periplasmic binding protein/LacI transcriptional regulator
scnpilot_cont_500_p_scaffold_1173_4
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3823..5379
DNA (1557bp) protein (519aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716, ECO:0000256|SAAS:SAAS00041637};; TaxID=40318 species="Bacteria; Actinobacteria;
ABC transporter ATP-binding protein n=2 Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JXX2_STRHJ
ABC transporter ATP-binding protein
scnpilot_cont_500_p_scaffold_1173_5
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5376..6830
DNA (1455bp) protein (485aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037625D4 rbh
Oxidoreductase {ECO:0000313|EMBL:GAN98447.1}; TaxID=1234668 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xyl
hypothetical protein
scnpilot_cont_500_p_scaffold_1173_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

6850..7749
DNA (900bp) protein (300aa)
carbon monoxide dehydrogenase, medium subunit; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
carbon-monoxide dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI000378AB05 rbh
carbon monoxide dehydrogenase
scnpilot_cont_500_p_scaffold_1173_7
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

7742..8233
DNA (492bp) protein (164aa)
(2Fe-2S)-binding domain-containing protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2] Tax=RBG_16_RIF_CHLX_70_13_curated
carbon monoxide dehydrogenase n=1 Tax=Rhizobium loti RepID=UPI00036F3AE0
(2Fe-2S)-binding domain-containing protein
scnpilot_cont_500_p_scaffold_1173_8
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8230..8760
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000378CB93
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G {ECO:0000313|EMBL:ADU51602.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter
scnpilot_cont_500_p_scaffold_1173_9

Not on your lists

8757..11177
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003819B11 rbh
Putative aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:ABZ79365.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
scnpilot_cont_500_p_scaffold_1173_10
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11247..12167
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037B35FF
LysR family transcriptional regulator
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31705.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
scnpilot_cont_500_p_scaffold_1173_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12260..12790)
DNA (531bp) protein (177aa)
Cupin region n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVF3_RHOP2 rbh
cupin region
Cupin region {ECO:0000313|EMBL:ABD07807.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris
scnpilot_cont_500_p_scaffold_1173_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13018..13668)
DNA (651bp) protein (217aa)
Transcriptional regulator, TetR family n=2 Tax=Oligotropha carboxidovorans RepID=B6JFH3_OLICO
TetR family transcriptional regulator
Transcriptional regulator, TetR/AcrR family {ECO:0000313|EMBL:AEI05915.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="O
scnpilot_cont_500_p_scaffold_1173_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13923..15641
DNA (1719bp) protein (573aa)
Fumarate reductase/succinate dehydrogenase flavoprotein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVH2_RHOP2 rbh
putative FAD-binding dehydrogenase rbh
Fumarate reductase/succinate dehydrogenase flavoprotein {ECO:0000313|EMBL:ABD07788.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudom
scnpilot_cont_500_p_scaffold_1173_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15874..16845
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GC69_9BRAD
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
scnpilot_cont_500_p_scaffold_1173_15
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16930..17721
DNA (792bp) protein (264aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8II64_METNO
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL57933.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
scnpilot_cont_500_p_scaffold_1173_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17735..18532
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI0003805980
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EKF39985.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriacea
ABC transporter
scnpilot_cont_500_p_scaffold_1173_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18584..19438
DNA (855bp) protein (285aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2) rbh
Carbon-monoxide dehydrogenase {ECO:0000313|EMBL:ABD07792.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ABD07792.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobia
Carbon-monoxide dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG8_RHOP2 rbh
scnpilot_cont_500_p_scaffold_1173_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19489..19995
DNA (507bp) protein (169aa)
(2Fe-2S)-binding protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG7_RHOP2
(2Fe-2S)-binding protein
(2Fe-2S)-binding protein {ECO:0000313|EMBL:ABD07793.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomona
scnpilot_cont_500_p_scaffold_1173_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19988..22132
DNA (2145bp) protein (715aa)
carbon-monoxide dehydrogenase (EC:1.2.99.2) rbh
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:ABD07794.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ABD07794.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobact
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG6_RHOP2 rbh
scnpilot_cont_500_p_scaffold_1173_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22331..23320)
DNA (990bp) protein (330aa)
Isochorismatase hydrolase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Y1_VARPS rbh
isochorismatase hydrolase rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:ACS22612.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
scnpilot_cont_500_p_scaffold_1173_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23321..23515)
DNA (195bp) protein (65aa)
4-oxalocrotonate tautomerase family enzyme n=1 Tax=Afipia felis ATCC 53690 RepID=K8NT14_AFIFE
4-oxalocrotonate tautomerase family enzyme {ECO:0000313|EMBL:EKS29358.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
4-oxalocrotonate tautomerase family enzyme
scnpilot_cont_500_p_scaffold_1173_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23528..24184)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIF5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81100.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1173_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24195..25541)
DNA (1347bp) protein (449aa)
Amidohydrolase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Y4_VARPS rbh
amidohydrolase rbh
Amidohydrolase {ECO:0000313|EMBL:ACS22615.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S1
scnpilot_cont_500_p_scaffold_1173_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25538..26428)
DNA (891bp) protein (297aa)
Shikimate/quinate 5-dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Y8_VARPS rbh
Shikimate/quinate 5-dehydrogenase rbh
Shikimate/quinate 5-dehydrogenase {ECO:0000313|EMBL:ACS22616.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax p
scnpilot_cont_500_p_scaffold_1173_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26425..27513)
DNA (1089bp) protein (363aa)
NAD/NADP octopine/nopaline dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Y9_VARPS rbh
NAD/NADP octopine/nopaline dehydrogenase rbh
NAD/NADP octopine/nopaline dehydrogenase {ECO:0000313|EMBL:ACS22617.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovor
scnpilot_cont_500_p_scaffold_1173_26
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27521..28336)
DNA (816bp) protein (272aa)
ABC transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8W5_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:EKF17470.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificu
ABC transporter rbh
scnpilot_cont_500_p_scaffold_1173_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28419..29195)
DNA (777bp) protein (259aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Z1_VARPS rbh
binding-protein-dependent transport systems inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS22619.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
scnpilot_cont_500_p_scaffold_1173_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29238..30230)
DNA (993bp) protein (331aa)
NMT1/THI5 like domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Z2_VARPS rbh
NMT1/THI5 like domain protein rbh
NMT1/THI5 like domain protein {ECO:0000313|EMBL:ACS22620.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sourc
scnpilot_cont_500_p_scaffold_1173_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30509..31171
DNA (663bp) protein (221aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Z3_VARPS
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACS22621.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
scnpilot_cont_500_p_scaffold_1173_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31211..31678
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D0Z4_VARPS
Endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ACS22622.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (s
Displaying items 1-30 of 50 in total

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