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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 80001-80050 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_17771
Species: R_Alphaproteobacteria_66_14 (100%)
2 2887 bp 66.51 3.33 100.38
scnpilot_cont_500_p_scaffold_29816 3 2095 bp 67.02 2.51 100.38
scnpilot_cont_500_p_scaffold_70069
Species: Leifsonia rubra (50%)
2 1569 bp 70.75 3.15 100.38
scnpilot_cont_500_p_scaffold_87684
Species: bacterium YEK0313 (50%)
2 1046 bp 69.41 2.01 100.38
scnpilot_cont_500_p_scaffold_87689 3 1046 bp 57.46 2.58 100.38
scnpilot_cont_500_p_scaffold_87705
Species: Hyphomicrobium sp. MC1 (50%)
2 1046 bp 65.39 2.87 100.38
scnpilot_cont_500_p_scaffold_47222
Species: Bradyrhizobium sp. WSM1253 (66.67%)
3 1569 bp 67.37 3.35 100.38
scnpilot_cont_500_p_scaffold_87712
Species: Microbacterium sp. oral taxon 186 (50%)
2 1046 bp 74.95 3.44 100.38
scnpilot_cont_500_p_scaffold_87764
Species: Ochrobactrum sp. CDB2 (50%)
2 1046 bp 69.02 2.01 100.38
scnpilot_cont_500_p_scaffold_37175
Species: R_Alphaproteobacteria_66_14 (50%)
2 1829 bp 69.71 2.13 100.38
scnpilot_cont_500_p_scaffold_62830
Order: Rhizobiales (66.67%)
3 1306 bp 57.04 2.87 100.38
scnpilot_cont_500_p_scaffold_62882
Species: Sphingomonas taxi (66.67%)
3 1306 bp 68.76 3.79 100.38
scnpilot_cont_500_p_scaffold_37278
Phylum: Proteobacteria (66.67%)
3 1826 bp 66.54 2.79 100.38
scnpilot_cont_500_p_scaffold_88092
Species: Microbacterium sp. TS-1 (50%)
2 1043 bp 73.44 1.44 100.38
scnpilot_cont_500_p_scaffold_20902
Species: Legionella longbeachae (100%)
3 2600 bp 41.62 3.12 100.38
scnpilot_cont_500_p_scaffold_37440
Species: Cellulomonas flavigena (66.67%)
3 1820 bp 75.82 4.45 100.38
scnpilot_cont_500_p_scaffold_63505
Species: Mesorhizobium sp. L103C131B0 (50%)
2 1297 bp 67.39 2.78 100.39
scnpilot_cont_500_p_scaffold_88747 3 1037 bp 71.75 1.30 100.39
scnpilot_cont_500_p_scaffold_88819 2 1037 bp 64.22 2.31 100.39
scnpilot_cont_500_p_scaffold_63768 2 1294 bp 55.26 4.64 100.39
scnpilot_cont_500_p_scaffold_89191
Species: Rhodanobacter spathiphylli (100%)
2 1034 bp 68.67 3.34 100.39
scnpilot_cont_500_p_scaffold_89512
Species: Burkholderia oklahomensis (50%)
2 1031 bp 70.61 1.45 100.39
scnpilot_cont_500_p_scaffold_14238
Species: R_Alphaproteobacteria_66_14 (100%)
2 3338 bp 67.08 3.28 100.39
scnpilot_cont_500_p_scaffold_90289
Species: Acidovorax sp. JS42 (100%)
2 1025 bp 67.02 2.63 100.39
scnpilot_cont_500_p_scaffold_90328
Species: Burkholderia sacchari (50%)
2 1025 bp 70.93 1.46 100.39
scnpilot_cont_500_p_scaffold_48933 3 1533 bp 50.10 4.89 100.39
scnpilot_cont_500_p_scaffold_48938
Species: Frankia sp. EUN1f (100%)
2 1533 bp 73.78 5.09 100.39
scnpilot_cont_500_p_scaffold_90677 2 1022 bp 60.27 2.20 100.39
scnpilot_cont_500_p_scaffold_48945
Species: Frankia sp. EUN1f (50%)
2 1533 bp 75.02 5.68 100.39
scnpilot_cont_500_p_scaffold_90766
Species: Variovorax paradoxus (50%)
2 1022 bp 69.67 2.05 100.39
scnpilot_cont_500_p_scaffold_25682 5 2295 bp 49.80 5.03 100.39
scnpilot_cont_500_p_scaffold_91033
Species: Variovorax sp. CF313 (100%)
2 1019 bp 67.03 2.21 100.39
scnpilot_cont_500_p_scaffold_49369 3 1524 bp 62.40 1.77 100.39
scnpilot_cont_500_p_scaffold_49524
Class: Actinobacteria (66.67%)
3 1521 bp 70.09 2.56 100.39
scnpilot_cont_500_p_scaffold_91827
Species: Mesorhizobium sp. SOD10 (100%)
2 1013 bp 66.54 2.37 100.40
scnpilot_cont_500_p_scaffold_49720
Species: Microbacterium testaceum (50%)
2 1518 bp 71.48 2.57 100.40
scnpilot_cont_500_p_scaffold_92235
Species: Mesorhizobium sp. STM 4661 (50%)
2 1010 bp 65.05 1.49 100.40
scnpilot_cont_500_p_scaffold_92276
Species: Variovorax sp. CF313 (50%)
2 1010 bp 66.93 2.38 100.40
scnpilot_cont_500_p_scaffold_92315
Species: Microbacterium testaceum (100%)
2 1010 bp 65.54 2.67 100.40
scnpilot_cont_500_p_scaffold_66270 3 1261 bp 60.35 6.54 100.40
scnpilot_cont_500_p_scaffold_21972
Species: Mycobacterium mageritense (66.67%)
3 2519 bp 67.21 2.02 100.40
scnpilot_cont_500_p_scaffold_92718
Species: Nitrobacter hamburgensis (100%)
2 1007 bp 67.92 1.49 100.40
scnpilot_cont_500_p_scaffold_92599
Species: Microbacterium oxydans (50%)
2 1007 bp 64.45 2.68 100.40
scnpilot_cont_500_p_scaffold_39423 3 1760 bp 61.93 1.53 100.40
scnpilot_cont_500_p_scaffold_39554
Species: Sphingobacterium spiritivorum (50%)
2 1757 bp 43.65 1.45 100.40
scnpilot_cont_500_p_scaffold_93026
Species: Skermanella stibiiresistens (50%)
2 1004 bp 64.24 1.20 100.40
scnpilot_cont_500_p_scaffold_93028
Species: R_Betaproteobacteria_68_150 (50%)
2 1004 bp 70.22 1.64 100.40
scnpilot_cont_500_p_scaffold_14738
Species: Rhodanobacter denitrificans (75%)
4 3263 bp 67.45 3.54 100.40
scnpilot_cont_500_p_scaffold_93096
Species: Stenotrophomonas maltophilia (50%)
2 1004 bp 65.74 2.09 100.40
scnpilot_cont_500_p_scaffold_97337
Species: Polymorphum gilvum (66.67%)
3 1500 bp 67.33 2.90 100.40
Displaying items 80001-80050 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.