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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 80201-80250 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_65013
Species: Rhodanobacter thiooxydans (66.67%)
3 1277 bp 70.09 2.58 100.55
scnpilot_cont_500_p_scaffold_82262 2 1092 bp 63.74 1.37 100.55
scnpilot_cont_500_p_scaffold_53274 2 1453 bp 55.68 7.43 100.55
scnpilot_cont_500_p_scaffold_65491 3 1271 bp 60.35 1.65 100.55
scnpilot_cont_500_p_scaffold_65673
Species: Variovorax paradoxus (50%)
2 1268 bp 72.16 2.01 100.55
scnpilot_cont_500_p_scaffold_53634
Species: Nitrobacter hamburgensis (100%)
2 1447 bp 63.44 2.07 100.55
scnpilot_cont_500_p_scaffold_10402
Phylum: Proteobacteria (60%)
5 4159 bp 37.03 3.07 100.55
scnpilot_cont_500_p_scaffold_24730
Order: Micrococcales (75%)
4 2348 bp 72.23 2.75 100.55
scnpilot_cont_500_p_scaffold_83287
Species: Phytophthora parasitica (50%)
2 1083 bp 62.60 2.22 100.55
scnpilot_cont_500_p_scaffold_83301
Species: Entamoeba histolytica (50%)
2 1083 bp 50.32 3.32 100.55
scnpilot_cont_500_p_scaffold_83321
Species: Niastella koreensis (50%)
2 1083 bp 49.77 1.66 100.55
scnpilot_cont_500_p_scaffold_66226
Species: Microbacterium mangrovi (50%)
2 1262 bp 69.41 2.14 100.55
scnpilot_cont_500_p_scaffold_83683 2 1080 bp 57.59 2.22 100.56
scnpilot_cont_500_p_scaffold_28347
Species: Methylobacterium nodulans (75%)
4 2160 bp 59.40 3.33 100.56
scnpilot_cont_500_p_scaffold_83659
Species: Leifsonia xyli (100%)
2 1080 bp 65.56 1.39 100.56
scnpilot_cont_500_p_scaffold_66437
Class: Alphaproteobacteria (66.67%)
3 1259 bp 66.72 2.03 100.56
scnpilot_cont_500_p_scaffold_16310
Species: CSP1_3_Armatimonadetes (66.67%)
3 3052 bp 52.56 3.49 100.56
scnpilot_cont_500_p_scaffold_84039
Species: Delftia acidovorans (50%)
2 1077 bp 59.61 94.01 100.56
scnpilot_cont_500_p_scaffold_84733
Species: Candida tenuis (50%)
2 1071 bp 24.18 2.10 100.56
scnpilot_cont_500_p_scaffold_84753
Species: Leifsonia aquatica (100%)
2 1071 bp 70.03 2.10 100.56
scnpilot_cont_500_p_scaffold_67682
Class: Alphaproteobacteria (66.67%)
3 1244 bp 70.02 2.17 100.56
scnpilot_cont_500_p_scaffold_55232
Species: Acidovorax sp. MR-S7 (100%)
2 1420 bp 69.51 2.32 100.56
scnpilot_cont_500_p_scaffold_29192
Species: Saccharomyces cerevisiae (50%)
2 2121 bp 64.50 7.07 100.57
scnpilot_cont_500_p_scaffold_86135
Species: Microbacterium testaceum (100%)
2 1059 bp 73.94 2.55 100.57
scnpilot_cont_500_p_scaffold_22803
Species: Novosphingobium subterraneum (75%)
4 2464 bp 67.61 3.10 100.57
scnpilot_cont_500_p_scaffold_86550
Species: Ochrobactrum sp. EGD-AQ16 (50%)
2 1056 bp 67.99 2.98 100.57
scnpilot_cont_500_p_scaffold_46553 3 1584 bp 22.73 1.52 100.57
scnpilot_cont_500_p_scaffold_39648 3 1754 bp 62.66 9.49 100.57
scnpilot_cont_500_p_scaffold_25979
Species: Sphingomonas wittichii (50%)
4 2279 bp 72.22 3.69 100.57
scnpilot_cont_500_p_scaffold_87286
Order: Xanthomonadales (66.67%)
3 1050 bp 70.86 1.57 100.57
scnpilot_cont_500_p_scaffold_20637
Species: Legionella longbeachae (100%)
4 2619 bp 43.11 2.58 100.57
scnpilot_cont_500_p_scaffold_146889
Genus: Sphingobium (100%)
3 1220 bp 70.90 1.72 100.57
scnpilot_cont_500_p_scaffold_47376 2 1566 bp 62.32 2.97 100.57
scnpilot_cont_500_p_scaffold_87946
Species: Legionella longbeachae (100%)
2 1044 bp 42.34 3.02 100.57
scnpilot_cont_500_p_scaffold_40283
Class: Alphaproteobacteria (66.67%)
3 1736 bp 64.98 3.11 100.58
scnpilot_cont_500_p_scaffold_88384 3 1041 bp 61.67 6.34 100.58
scnpilot_cont_500_p_scaffold_20961
Genus: Microbacterium (100%)
3 2595 bp 72.45 3.24 100.58
scnpilot_cont_500_p_scaffold_88671
Species: Sinorhizobium medicae (50%)
2 1038 bp 64.84 1.45 100.58
scnpilot_cont_500_p_scaffold_70719
Genus: Acidovorax (66.67%)
3 1208 bp 69.78 1.49 100.58
scnpilot_cont_500_p_scaffold_40949
Species: Nitrobacter hamburgensis (100%)
2 1718 bp 64.90 3.14 100.58
scnpilot_cont_500_p_scaffold_89780 3 1029 bp 51.31 1.75 100.58
scnpilot_cont_500_p_scaffold_71615
Species: Rhizobium leguminosarum (100%)
2 1199 bp 63.39 1.75 100.58
scnpilot_cont_500_p_scaffold_35877
Species: Acinetobacter sp. NIPH 236 (50%)
2 1870 bp 39.47 2.97 100.59
scnpilot_cont_500_p_scaffold_90917
Species: Granulibacter bethesdensis (66.67%)
3 1020 bp 69.71 2.35 100.59
scnpilot_cont_500_p_scaffold_24231
Species: Microbacterium testaceum (50%)
2 2377 bp 72.70 3.98 100.59
scnpilot_cont_500_p_scaffold_59185
Species: Acidovorax sp. CF316 (50%)
2 1357 bp 68.31 1.22 100.59
scnpilot_cont_500_p_scaffold_72758 3 1187 bp 60.83 1.52 100.59
scnpilot_cont_500_p_scaffold_49525
Species: Variovorax paradoxus (66.67%)
3 1521 bp 70.81 1.78 100.59
scnpilot_cont_500_p_scaffold_36263
Species: R_Brevundimonas_68_13 (50%)
2 1858 bp 67.44 2.58 100.59
scnpilot_cont_500_p_scaffold_16560
Species: Rhizobium tropici (100%)
5 3024 bp 62.93 3.47 100.59
Displaying items 80201-80250 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.