ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %

Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22

Displaying items 80301-80350 of 81380 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_cont_500_p_scaffold_58396	3	1368 bp	57.97	1.54	100.66
scnpilot_cont_500_p_scaffold_86284 Species: marine sediment metagenome (50%)	2	1058 bp	58.98	3.12	100.66
scnpilot_cont_500_p_scaffold_37687 Species: Rhodopseudomonas palustris (50%)	2	1812 bp	64.68	2.65	100.66
scnpilot_cont_500_p_scaffold_59637 Species: Sorangium cellulosum (50%)	2	1350 bp	65.19	3.78	100.67
scnpilot_cont_500_p_scaffold_71706 Species: Monosiga brevicollis (50%)	2	1198 bp	61.19	5.38	100.67
scnpilot_cont_500_p_scaffold_72572 Species: Methylococcus capsulatus (66.67%)	3	1189 bp	68.80	1.26	100.67
scnpilot_cont_500_p_scaffold_44538 Species: RLO_Burkholderiales_65_40 (100%)	2	1630 bp	73.44	2.67	100.68
scnpilot_cont_500_p_scaffold_89234	2	1034 bp	62.28	4.50	100.68
scnpilot_cont_500_p_scaffold_44803 Species: Moumouvirus (50%)	2	1624 bp	25.12	2.22	100.68
scnpilot_cont_500_p_scaffold_89926 Species: Sphingobacterium paucimobilis (50%)	2	1028 bp	42.41	2.33	100.68
scnpilot_cont_500_p_scaffold_22342 Class: Alphaproteobacteria (100%)	5	2494 bp	61.75	2.71	100.68
scnpilot_cont_500_p_scaffold_52529	4	1466 bp	65.08	2.25	100.68
scnpilot_cont_500_p_scaffold_90277	4	1025 bp	68.29	1.46	100.68
scnpilot_cont_500_p_scaffold_45693 Species: Pseudomonas fluorescens (50%)	2	1603 bp	63.38	2.06	100.69
scnpilot_cont_500_p_scaffold_39935 Class: Alphaproteobacteria (66.67%)	3	1746 bp	67.87	2.49	100.69
scnpilot_cont_500_p_scaffold_102577 Domain: Bacteria (66.67%)	3	1734 bp	69.15	4.24	100.69
scnpilot_cont_500_p_scaffold_54146 Species: Variovorax sp. CF313 (66.67%)	3	1439 bp	67.62	1.88	100.70
scnpilot_cont_500_p_scaffold_54107 Species: Sphingobacterium sp. PM2-P1-29 (50%)	2	1439 bp	42.32	2.08	100.70
scnpilot_cont_500_p_scaffold_92684	2	1007 bp	59.48	2.98	100.70
scnpilot_cont_500_p_scaffold_63807 Species: Starkeya novella (50%)	2	1293 bp	61.41	1.86	100.70
scnpilot_cont_500_p_scaffold_76427 Species: Variovorax paradoxus (100%)	2	1147 bp	71.40	1.31	100.70
scnpilot_cont_500_p_scaffold_21144 Class: Gammaproteobacteria (50%)	4	2580 bp	34.34	3.43	100.70
scnpilot_cont_500_p_scaffold_76742	4	1144 bp	60.49	1.84	100.70
scnpilot_cont_500_p_scaffold_41120 Species: Sphingobacterium spiritivorum (100%)	2	1713 bp	42.38	2.63	100.70
scnpilot_cont_500_p_scaffold_41132 Species: Crassostrea gigas (50%)	2	1713 bp	55.22	6.83	100.70
scnpilot_cont_500_p_scaffold_64493 Species: Pseudomonas bauzanensis (100%)	2	1284 bp	66.28	1.64	100.70
scnpilot_cont_500_p_scaffold_28859 Species: Candidatus Phaeomarinobacter ectocarpi (50%)	2	2136 bp	62.08	3.09	100.70
scnpilot_cont_500_p_scaffold_77307	2	1138 bp	68.45	2.37	100.70
scnpilot_cont_500_p_scaffold_78250 Species: Acinetobacter gyllenbergii (50%)	2	1129 bp	43.22	1.86	100.71
scnpilot_cont_500_p_scaffold_48019 Species: Rhodanobacter spathiphylli (50%)	2	1552 bp	69.20	1.93	100.71
scnpilot_cont_500_p_scaffold_55848	3	1409 bp	33.36	1.49	100.71
scnpilot_cont_500_p_scaffold_78606 Species: Xanthomonas sacchari (100%)	2	1126 bp	70.16	1.60	100.71
scnpilot_cont_500_p_scaffold_78532 Species: Xanthophyllomyces dendrorhous (50%)	2	1126 bp	49.11	3.73	100.71
scnpilot_cont_500_p_scaffold_79572 Species: Pedobacter sp. V48 (50%)	2	1117 bp	51.66	1.61	100.72
scnpilot_cont_500_p_scaffold_48866 Species: Aminobacter aminovorans (50%)	2	1534 bp	55.67	2.35	100.72
scnpilot_cont_500_p_scaffold_80178 Species: Thauera aminoaromatica (66.67%)	3	1111 bp	67.51	2.97	100.72
scnpilot_cont_500_p_scaffold_80576 Species: Ochrobactrum sp. EGD-AQ16 (50%)	2	1108 bp	64.98	4.20	100.72
scnpilot_cont_500_p_scaffold_57890 Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)	2	1376 bp	51.53	2.18	100.73
scnpilot_cont_500_p_scaffold_12796 Species: Legionella oakridgensis (50%)	4	3577 bp	41.04	3.52	100.73
scnpilot_cont_500_p_scaffold_58087 Species: Acanthamoeba castellanii (50%)	2	1373 bp	58.34	1.86	100.73
scnpilot_cont_500_p_scaffold_43787 Species: Burkholderia xenovorans (50%)	2	1647 bp	66.73	1.82	100.73
scnpilot_cont_500_p_scaffold_34755 Species: R_Alphaproteobacteria_66_14 (66.67%)	3	1906 bp	68.78	2.44	100.74
scnpilot_cont_500_p_scaffold_34759 Genus: Sphingobium (66.67%)	3	1906 bp	70.51	3.15	100.74
scnpilot_cont_500_p_scaffold_44457	3	1632 bp	58.88	6.99	100.74
scnpilot_cont_500_p_scaffold_59265 Genus: Sphingomonas (100%)	3	1355 bp	66.72	3.21	100.74
scnpilot_cont_500_p_scaffold_83496 Species: Burkholderia sp. YI23 (50%)	2	1081 bp	60.68	1.67	100.74
scnpilot_cont_500_p_scaffold_83537 Species: Bosea sp. LC85 (100%)	2	1081 bp	73.36	2.08	100.74
scnpilot_cont_500_p_scaffold_83545	2	1081 bp	57.35	1.94	100.74
scnpilot_cont_500_p_scaffold_70156 Species: Pseudomonas sp. AAC (50%)	2	1215 bp	60.49	1.73	100.74
scnpilot_cont_500_p_scaffold_51723 Species: Acinetobacter sp. NIPH 236 (100%)	2	1480 bp	36.28	3.24	100.74

Displaying items 80301-80350 of 81380 in total

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNpilot_cont_500_p_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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