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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 51-100 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_71073 2 1205 bp 64.15 2.61 111.04
scnpilot_cont_500_p_scaffold_72295 2 1192 bp 64.51 6.92 110.99
scnpilot_cont_500_p_scaffold_50328 2 1506 bp 56.64 6.97 110.96
scnpilot_cont_500_p_scaffold_87933
Species: Dictyostelium fasciculatum (50%)
2 1044 bp 64.66 11.35 110.92
scnpilot_cont_500_p_scaffold_41008
Species: Opisthorchis viverrini (50%)
2 1716 bp 45.45 13.20 110.84
scnpilot_cont_500_p_scaffold_74170 2 1171 bp 57.90 2.05 110.67
scnpilot_cont_500_p_scaffold_87880
Species: Polysphondylium pallidum (50%)
2 1045 bp 60.10 5.31 110.53
scnpilot_cont_500_p_scaffold_83925 2 1078 bp 63.54 1.67 110.48
scnpilot_cont_500_p_scaffold_88896 4 1036 bp 62.45 1.74 110.33
scnpilot_cont_500_p_scaffold_54128
Species: Crassostrea gigas (50%)
2 1439 bp 45.38 7.30 110.29
scnpilot_cont_500_p_scaffold_71823 3 1197 bp 61.57 2.01 110.02
scnpilot_cont_500_p_scaffold_82777 3 1088 bp 54.60 7.58 110.02
scnpilot_cont_500_p_scaffold_73006
Species: Polysphondylium pallidum (50%)
2 1184 bp 56.76 2.03 109.97
scnpilot_cont_500_p_scaffold_50482
Species: Hyaloperonospora arabidopsidis (50%)
2 1504 bp 63.70 9.47 109.91
scnpilot_cont_500_p_scaffold_80393
Species: Acanthamoeba castellanii (66.67%)
3 1109 bp 50.50 3.52 109.83
scnpilot_cont_500_p_scaffold_85619 4 1064 bp 65.41 6.63 109.68
scnpilot_cont_500_p_scaffold_78823 2 1123 bp 57.08 2.67 109.53
scnpilot_cont_500_p_scaffold_88943 2 1036 bp 43.05 3.91 109.46
scnpilot_cont_500_p_scaffold_88547 2 1039 bp 60.06 1.88 109.43
scnpilot_cont_500_p_scaffold_61281
Species: Beggiatoa sp. PS (50%)
2 1327 bp 59.91 2.03 109.42
scnpilot_cont_500_p_scaffold_46592 4 1583 bp 56.48 2.94 109.35
scnpilot_cont_500_p_scaffold_85423 3 1065 bp 57.28 5.49 109.30
scnpilot_cont_500_p_scaffold_85445 2 1065 bp 58.78 2.82 109.30
scnpilot_cont_500_p_scaffold_61135
Domain: Bacteria (66.67%)
3 1329 bp 63.81 2.26 109.26
scnpilot_cont_500_p_scaffold_89735 3 1030 bp 46.41 3.20 109.22
scnpilot_cont_500_p_scaffold_75466 2 1157 bp 45.29 3.63 109.16
scnpilot_cont_500_p_scaffold_47186
Species: Brucella suis (50%)
2 1570 bp 67.52 2.96 109.11
scnpilot_cont_500_p_scaffold_51132 5 1491 bp 59.09 2.62 109.05
scnpilot_cont_500_p_scaffold_72809 2 1186 bp 43.25 3.29 109.02
scnpilot_cont_500_p_scaffold_82843 3 1087 bp 51.06 1.93 109.02
scnpilot_cont_500_p_scaffold_81246
Species: Microbacterium sp. CH12i (50%)
2 1101 bp 67.85 2.18 108.99
scnpilot_cont_500_p_scaffold_76282 3 1148 bp 65.85 4.83 108.97
scnpilot_cont_500_p_scaffold_63108 2 1303 bp 57.33 7.14 108.90
scnpilot_cont_500_p_scaffold_68513 4 1234 bp 53.00 2.67 108.67
scnpilot_cont_500_p_scaffold_85962 2 1061 bp 55.61 1.41 108.58
scnpilot_cont_500_p_scaffold_72565
Species: Botrytis cinerea (50%)
2 1189 bp 50.88 3.66 108.50
scnpilot_cont_500_p_scaffold_88273 2 1041 bp 58.50 1.73 108.36
scnpilot_cont_500_p_scaffold_67898
Species: Stylonychia lemnae (50%)
2 1242 bp 44.20 1.93 108.21
scnpilot_cont_500_p_scaffold_74689 4 1165 bp 55.97 6.31 108.16
scnpilot_cont_500_p_scaffold_47547 5 1562 bp 62.10 1.34 108.13
scnpilot_cont_500_p_scaffold_83072 2 1085 bp 61.84 2.76 108.11
scnpilot_cont_500_p_scaffold_88820 2 1037 bp 43.78 4.34 107.91
scnpilot_cont_500_p_scaffold_35345 3 1887 bp 59.25 1.67 107.79
scnpilot_cont_500_p_scaffold_48213 3 1548 bp 57.43 5.43 107.75
scnpilot_cont_500_p_scaffold_37849 4 1807 bp 62.53 1.74 107.75
scnpilot_cont_500_p_scaffold_47253 3 1568 bp 60.84 1.72 107.72
scnpilot_cont_500_p_scaffold_73162 4 1182 bp 57.45 2.28 107.61
scnpilot_cont_500_p_scaffold_85451
Species: Sphingomonas sp. WHSC-8 (50%)
2 1065 bp 69.20 1.41 107.61
scnpilot_cont_500_p_scaffold_92665 3 1007 bp 48.76 2.68 107.55
scnpilot_cont_500_p_scaffold_70760 2 1208 bp 58.94 1.37 107.53
Displaying items 51-100 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.