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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 151-200 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_44316
Domain: Eukaryota (100%)
3 1635 bp 48.44 3.39 105.87
scnpilot_cont_500_p_scaffold_82998 3 1086 bp 62.52 2.76 105.80
scnpilot_cont_500_p_scaffold_84998 3 1069 bp 58.00 2.25 105.80
scnpilot_cont_500_p_scaffold_77065
Species: Ralstonia solanacearum (50%)
2 1140 bp 70.26 2.11 105.79
scnpilot_cont_500_p_scaffold_92278 2 1010 bp 57.92 2.08 105.74
scnpilot_cont_500_p_scaffold_41171 3 1712 bp 57.59 7.97 105.67
scnpilot_cont_500_p_scaffold_55201
Species: Acanthamoeba castellanii (50%)
2 1420 bp 54.01 4.65 105.63
scnpilot_cont_500_p_scaffold_33815 4 1940 bp 62.37 6.03 105.62
scnpilot_cont_500_p_scaffold_45498 3 1608 bp 51.37 4.85 105.60
scnpilot_cont_500_p_scaffold_90920 2 1020 bp 61.76 2.06 105.59
scnpilot_cont_500_p_scaffold_62312 4 1313 bp 47.37 11.08 105.56
scnpilot_cont_500_p_scaffold_82995 2 1086 bp 65.56 2.07 105.53
scnpilot_cont_500_p_scaffold_164405
Species: Burkholderia sp. 2002721687 (50%)
2 1089 bp 69.33 2.48 105.51
scnpilot_cont_500_p_scaffold_93123
Species: Acinetobacter sp. ANC 3862 (66.67%)
3 1004 bp 40.84 3.14 105.48
scnpilot_cont_500_p_scaffold_48359 3 1545 bp 62.59 7.28 105.44
scnpilot_cont_500_p_scaffold_85246 2 1067 bp 52.39 1.41 105.44
scnpilot_cont_500_p_scaffold_91046
Species: Legionella fallonii (50%)
2 1019 bp 60.45 7.80 105.40
scnpilot_cont_500_p_scaffold_16837 2 2989 bp 49.72 6.42 105.39
scnpilot_cont_500_p_scaffold_81813
Species: Camponotus floridanus (50%)
2 1096 bp 49.36 10.13 105.38
scnpilot_cont_500_p_scaffold_81440 2 1099 bp 50.86 3.14 105.37
scnpilot_cont_500_p_scaffold_47993 2 1552 bp 57.28 1.74 105.35
scnpilot_cont_500_p_scaffold_92159
Species: Thaumatomonas sp. TMT002 (50%)
2 1011 bp 59.64 3.12 105.34
scnpilot_cont_500_p_scaffold_87121
Species: Sporothrix schenckii (50%)
2 1051 bp 60.32 2.00 105.33
scnpilot_cont_500_p_scaffold_89264 3 1034 bp 49.81 2.32 105.32
scnpilot_cont_500_p_scaffold_93239
Order: Rhizobiales (100%)
3 1003 bp 70.09 1.20 105.28
scnpilot_cont_500_p_scaffold_15371
Species: Geobacter bemidjiensis (50%)
2 3172 bp 62.26 2.22 105.27
scnpilot_cont_500_p_scaffold_62014
Species: Acanthamoeba castellanii (50%)
2 1317 bp 61.20 9.34 105.24
scnpilot_cont_500_p_scaffold_69558 4 1222 bp 49.26 2.70 105.07
scnpilot_cont_500_p_scaffold_135494 3 1382 bp 55.21 4.12 105.07
scnpilot_cont_500_p_scaffold_78350
Species: Microbacterium laevaniformans (100%)
2 1128 bp 70.57 1.99 105.05
scnpilot_cont_500_p_scaffold_84941
Species: Devosia chinhatensis (50%)
2 1069 bp 66.32 1.12 104.96
scnpilot_cont_500_p_scaffold_32588
Species: Amphimedon queenslandica (50%)
2 1985 bp 44.03 5.59 104.89
scnpilot_cont_500_p_scaffold_88026
Species: Rhizobium sp. CF142 (100%)
2 1044 bp 63.98 2.30 104.89
scnpilot_cont_500_p_scaffold_75543
Species: Rhizobium sp. YS-1r (50%)
2 1156 bp 64.79 3.37 104.84
scnpilot_cont_500_p_scaffold_25740 3 2292 bp 59.82 7.33 104.84
scnpilot_cont_500_p_scaffold_34846 3 1903 bp 57.91 3.07 104.83
scnpilot_cont_500_p_scaffold_61177 3 1328 bp 57.15 7.23 104.82
scnpilot_cont_500_p_scaffold_90776 2 1022 bp 51.86 1.17 104.79
scnpilot_cont_500_p_scaffold_74441 2 1168 bp 58.90 6.55 104.79
scnpilot_cont_500_p_scaffold_65463
Species: Hyphomicrobium denitrificans (66.67%)
3 1810 bp 63.70 2.49 104.75
scnpilot_cont_500_p_scaffold_33090
Species: Thalassospira profundimaris (50%)
2 1965 bp 62.39 2.52 104.73
scnpilot_cont_500_p_scaffold_70668
Species: Comamonas testosteroni (50%)
2 1209 bp 56.24 1.49 104.72
scnpilot_cont_500_p_scaffold_49948
Species: Pseudomonas bauzanensis (60%)
5 1513 bp 67.55 2.38 104.69
scnpilot_cont_500_p_scaffold_86709
Species: Mesorhizobium sp. L2C085B000 (50%)
2 1055 bp 62.37 1.99 104.65
scnpilot_cont_500_p_scaffold_63589
Species: Arcticibacter svalbardensis (50%)
2 1296 bp 53.63 1.00 104.63
scnpilot_cont_500_p_scaffold_79944 2 1113 bp 61.28 5.12 104.58
scnpilot_cont_500_p_scaffold_75266 2 1159 bp 58.33 4.27 104.57
scnpilot_cont_500_p_scaffold_86869
Species: Rhodobacteraceae bacterium HIMB11 (50%)
2 1053 bp 63.15 1.71 104.56
scnpilot_cont_500_p_scaffold_47578 5 1561 bp 65.73 2.31 104.55
scnpilot_cont_500_p_scaffold_74167 2 1171 bp 62.25 2.31 104.53
Displaying items 151-200 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.