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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 951-1000 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_54225
Species: Acinetobacter tjernbergiae (50%)
2 1437 bp 42.24 1.88 100.84
scnpilot_cont_500_p_scaffold_28408 4 2157 bp 61.61 8.55 100.83
scnpilot_cont_500_p_scaffold_71641
Species: Bombyx mori (50%)
2 1199 bp 57.96 2.00 100.83
scnpilot_cont_500_p_scaffold_15719 3 3124 bp 58.80 8.35 100.83
scnpilot_cont_500_p_scaffold_53896
Species: Kirrobacter mercurialis (50%)
2 1443 bp 61.40 3.43 100.83
scnpilot_cont_500_p_scaffold_30805 3 2053 bp 58.74 7.89 100.83
scnpilot_cont_500_p_scaffold_33961
Genus: Ochrobactrum (100%)
3 1934 bp 66.29 3.10 100.83
scnpilot_cont_500_p_scaffold_70495 3 1211 bp 45.17 3.34 100.83
scnpilot_cont_500_p_scaffold_25551
Species: Afipia sp. P52-10 (50%)
4 2303 bp 67.74 3.06 100.83
scnpilot_cont_500_p_scaffold_46842
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1577 bp 66.58 2.38 100.82
scnpilot_cont_500_p_scaffold_82266
Species: Ralstonia pickettii (50%)
2 1092 bp 68.41 2.20 100.82
scnpilot_cont_500_p_scaffold_10922
Class: Gammaproteobacteria (66.67%)
3 4011 bp 40.64 4.11 100.82
scnpilot_cont_500_p_scaffold_18665
Species: Rhodanobacter denitrificans (66.67%)
3 2797 bp 70.11 3.00 100.82
scnpilot_cont_500_p_scaffold_30425
Class: Alphaproteobacteria (66.67%)
3 2068 bp 67.55 3.12 100.82
scnpilot_cont_500_p_scaffold_59790
Species: Microbacterium testaceum (100%)
2 1348 bp 71.44 2.11 100.82
scnpilot_cont_500_p_scaffold_80888
Species: Agreia bicolorata (50%)
2 1104 bp 75.27 1.63 100.82
scnpilot_cont_500_p_scaffold_59158
Species: Microbacterium sp. SUBG005 (50%)
2 1357 bp 72.81 1.99 100.81
scnpilot_cont_500_p_scaffold_45656
Species: Meyerozyma guilliermondii (50%)
2 1604 bp 62.97 2.06 100.81
scnpilot_cont_500_p_scaffold_51494
Species: Kibdelosporangium sp. MJ126-NF4 (50%)
2 1485 bp 69.63 2.63 100.81
scnpilot_cont_500_p_scaffold_68176 3 1238 bp 44.43 4.00 100.81
scnpilot_cont_500_p_scaffold_51317
Species: Bosea sp. LC85 (66.67%)
3 1488 bp 63.58 2.02 100.81
scnpilot_cont_500_p_scaffold_79332
Species: Hyphomicrobium denitrificans (100%)
2 1119 bp 59.87 2.68 100.80
scnpilot_cont_500_p_scaffold_79333 3 1119 bp 53.71 1.47 100.80
scnpilot_cont_500_p_scaffold_78962
Species: Variovorax sp. CF313 (100%)
2 1122 bp 65.60 2.41 100.80
scnpilot_cont_500_p_scaffold_50808
Species: Microbacterium sp. oral taxon 186 (50%)
2 1497 bp 71.28 3.31 100.80
scnpilot_cont_500_p_scaffold_67234
Species: Hyphomicrobium denitrificans (100%)
3 1250 bp 59.84 2.16 100.80
scnpilot_cont_500_p_scaffold_93691 3 1000 bp 57.80 4.95 100.80
scnpilot_cont_500_p_scaffold_57927
Species: Bradyrhizobium elkanii (50%)
2 1375 bp 69.89 2.51 100.80
scnpilot_cont_500_p_scaffold_57720
Species: Microbacterium mangrovi (100%)
2 1378 bp 73.29 2.39 100.80
scnpilot_cont_500_p_scaffold_93291 2 1003 bp 54.44 5.83 100.80
scnpilot_cont_500_p_scaffold_26229
Species: Nitrosospira sp. NpAV (100%)
3 2265 bp 54.00 3.58 100.79
scnpilot_cont_500_p_scaffold_66417
Species: Sphingomonas sp. Ant20 (66.67%)
3 1259 bp 71.17 2.38 100.79
scnpilot_cont_500_p_scaffold_66444
Species: Inquilinus limosus (50%)
2 1259 bp 69.66 2.03 100.79
scnpilot_cont_500_p_scaffold_77800
Species: Alicycliphilus denitrificans (50%)
2 1134 bp 63.76 6.48 100.79
scnpilot_cont_500_p_scaffold_92435
Order: Caulobacterales (66.67%)
3 1009 bp 67.29 3.87 100.79
scnpilot_cont_500_p_scaffold_49875
Species: Rhodanobacter thiooxydans (50%)
2 1515 bp 69.44 3.07 100.79
scnpilot_cont_500_p_scaffold_86621
Order: Rhizobiales (50%)
4 1643 bp 66.40 3.47 100.79
scnpilot_cont_500_p_scaffold_91980 2 1012 bp 56.92 1.48 100.79
scnpilot_cont_500_p_scaffold_92027
Species: Microbacterium testaceum (100%)
2 1012 bp 72.43 1.78 100.79
scnpilot_cont_500_p_scaffold_26009
Class: Actinobacteria (66.67%)
3 2277 bp 65.79 2.64 100.79
scnpilot_cont_500_p_scaffold_91962
Species: Hyphomicrobium denitrificans (100%)
2 1012 bp 59.98 2.08 100.79
scnpilot_cont_500_p_scaffold_49562
Phylum: Proteobacteria (100%)
3 1521 bp 67.00 2.37 100.79
scnpilot_cont_500_p_scaffold_65448 3 1271 bp 60.82 1.65 100.79
scnpilot_cont_500_p_scaffold_91234
Species: Clostridium intestinale (100%)
2 1018 bp 29.67 1.18 100.79
scnpilot_cont_500_p_scaffold_91276
Species: Flavihumibacter solisilvae (50%)
2 1018 bp 55.21 1.77 100.79
scnpilot_cont_500_p_scaffold_31126
Species: Naegleria gruberi (50%)
2 2039 bp 63.02 7.80 100.79
scnpilot_cont_500_p_scaffold_43334
Species: Acinetobacter sp. NIPH 236 (100%)
3 1658 bp 36.67 2.35 100.78
scnpilot_cont_500_p_scaffold_48926 2 1533 bp 66.54 2.15 100.78
scnpilot_cont_500_p_scaffold_55902
Species: R_Alphaproteobacteria_66_14 (100%)
2 1408 bp 68.11 4.05 100.78
scnpilot_cont_500_p_scaffold_64790
Species: Acidovorax sp. CF316 (50%)
2 1280 bp 68.98 1.17 100.78
Displaying items 951-1000 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.