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SCNpilot_cont_500_p_UNK

In projects: SCNPILOT_CONT_500_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 4.00 Longest contig: 87.34 Kbp Bin length: 156.24 Mbp GC content: 54.75 %
Contigs count: 81380 Features count: 213834 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 26 / 38 MC: 22
Displaying items 901-950 of 81380 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_33266
Species: Leishmania mexicana (50%)
2 1959 bp 57.94 6.97 100.92
scnpilot_cont_500_p_scaffold_71723 3 1198 bp 72.45 3.76 100.92
scnpilot_cont_500_p_scaffold_55349
Species: Chlorobium sp. GBChlB (50%)
2 1418 bp 51.69 1.90 100.92
scnpilot_cont_500_p_scaffold_22130
Species: R_Alphaproteobacteria_66_14 (100%)
2 2509 bp 68.07 2.69 100.92
scnpilot_cont_500_p_scaffold_82342 2 1091 bp 63.89 8.52 100.92
scnpilot_cont_500_p_scaffold_49038
Species: Acinetobacter sp. NIPH 236 (50%)
2 1531 bp 41.21 2.55 100.91
scnpilot_cont_500_p_scaffold_36068
Order: Burkholderiales (66.67%)
3 1864 bp 67.76 2.49 100.91
scnpilot_cont_500_p_scaffold_70891 4 1207 bp 60.23 2.11 100.91
scnpilot_cont_500_p_scaffold_61765
Class: Alphaproteobacteria (66.67%)
3 1320 bp 38.79 2.27 100.91
scnpilot_cont_500_p_scaffold_48591
Order: Sphingomonadales (66.67%)
3 1540 bp 66.56 2.63 100.91
scnpilot_cont_500_p_scaffold_54319
Species: Achromobacter insuavis (50%)
2 1436 bp 69.71 3.24 100.91
scnpilot_cont_500_p_scaffold_80777
Species: Sphingobacterium sp. ML3W (100%)
2 1106 bp 41.14 1.36 100.90
scnpilot_cont_500_p_scaffold_60862
Order: Burkholderiales (66.67%)
3 1332 bp 67.49 2.36 100.90
scnpilot_cont_500_p_scaffold_47585
Species: GWA2_Curvibacter_64_110_curated (50%)
2 1561 bp 67.20 1.73 100.90
scnpilot_cont_500_p_scaffold_38599
Species: Citrus sinensis (50%)
2 1784 bp 27.02 1.51 100.90
scnpilot_cont_500_p_scaffold_92962 3 1005 bp 55.12 3.58 100.90
scnpilot_cont_500_p_scaffold_30786
Species: R_Alphaproteobacteria_66_14 (75%)
4 3476 bp 68.04 2.72 100.89
scnpilot_cont_500_p_scaffold_47041
Domain: Metazoa (50%)
4 1573 bp 46.73 3.43 100.89
scnpilot_cont_500_p_scaffold_68056
Species: Pseudomonas mediterranea (50%)
4 1240 bp 59.19 1.00 100.89
scnpilot_cont_500_p_scaffold_16345
Genus: Microbacterium (50%)
4 3048 bp 76.15 3.74 100.89
scnpilot_cont_500_p_scaffold_41738
Species: Burkholderia pyrrocinia (50%)
2 1698 bp 64.61 1.77 100.88
scnpilot_cont_500_p_scaffold_59036 3 1359 bp 65.12 2.65 100.88
scnpilot_cont_500_p_scaffold_90993
Species: Acanthamoeba castellanii (66.67%)
3 1020 bp 57.94 1.18 100.88
scnpilot_cont_500_p_scaffold_46359
Species: Leishmania infantum (50%)
2 1588 bp 50.31 3.12 100.88
scnpilot_cont_500_p_scaffold_41481
Species: Hoeflea sp. BRH_c9 (100%)
3 1704 bp 64.73 2.82 100.88
scnpilot_cont_500_p_scaffold_80396
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (66.67%)
3 1591 bp 71.28 3.68 100.88
scnpilot_cont_500_p_scaffold_77267
Species: Rhodanobacter denitrificans (50%)
2 1139 bp 65.14 2.24 100.88
scnpilot_cont_500_p_scaffold_58430
Species: Sphingomonas sp. WHSC-8 (100%)
3 1368 bp 68.35 1.32 100.88
scnpilot_cont_500_p_scaffold_90230 2 1026 bp 62.28 3.95 100.88
scnpilot_cont_500_p_scaffold_90234 2 1026 bp 51.46 3.36 100.88
scnpilot_cont_500_p_scaffold_66808 2 1255 bp 65.34 5.26 100.88
scnpilot_cont_500_p_scaffold_66765
Species: Clavibacter michiganensis (100%)
2 1255 bp 75.22 2.15 100.88
scnpilot_cont_500_p_scaffold_76889
Species: Sphingopyxis sp. LC81 (66.67%)
3 1142 bp 70.75 1.58 100.88
scnpilot_cont_500_p_scaffold_89480
Species: Moumouvirus (50%)
2 1032 bp 25.58 2.62 100.87
scnpilot_cont_500_p_scaffold_33504
Species: Rhodopseudomonas palustris (50%)
2 1951 bp 63.66 2.31 100.87
scnpilot_cont_500_p_scaffold_76285
Species: Microbacterium testaceum (50%)
2 1148 bp 71.08 4.44 100.87
scnpilot_cont_500_p_scaffold_64645 2 1282 bp 65.13 1.87 100.86
scnpilot_cont_500_p_scaffold_64395
Species: alpha proteobacterium BAL199 (100%)
2 1285 bp 63.66 1.63 100.86
scnpilot_cont_500_p_scaffold_86980
Species: Chthoniobacter flavus (50%)
2 1053 bp 61.44 1.42 100.86
scnpilot_cont_500_p_scaffold_19775
Species: Microbacterium sp. oral taxon 186 (50%)
2 2692 bp 71.47 3.57 100.85
scnpilot_cont_500_p_scaffold_32452
Species: Microbacterium mangrovi (66.67%)
3 1990 bp 72.61 2.71 100.85
scnpilot_cont_500_p_scaffold_49419
Species: Bradyrhizobium sp. BTAi1 (50%)
2 1523 bp 67.56 2.36 100.85
scnpilot_cont_500_p_scaffold_49296
Species: Sphingomonas sp. MM-1 (50%)
2 1526 bp 67.43 2.85 100.85
scnpilot_cont_500_p_scaffold_73799
Species: Rhodanobacter spathiphylli (50%)
2 1175 bp 70.89 2.30 100.85
scnpilot_cont_500_p_scaffold_38760
Species: R_Phenylobacterium_69_31 (50%)
2 1779 bp 61.16 2.53 100.84
scnpilot_cont_500_p_scaffold_15128
Phylum: Proteobacteria (60%)
5 3204 bp 68.88 2.86 100.84
scnpilot_cont_500_p_scaffold_85149 2 1068 bp 56.84 2.67 100.84
scnpilot_cont_500_p_scaffold_85159 2 1068 bp 57.87 1.12 100.84
scnpilot_cont_500_p_scaffold_62876
Genus: Bradyrhizobium (66.67%)
3 1306 bp 57.73 1.84 100.84
scnpilot_cont_500_p_scaffold_62370
Genus: Microbacterium (66.67%)
3 1312 bp 71.27 1.60 100.84
Displaying items 901-950 of 81380 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.