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scnpilot_cont_500_p_scaffold_8_30

Organism: SCNPILOT_CONT_500_P_Novosphingobium_63_111

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: 35416..36258

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigJ n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B354DD similarity UNIREF
DB: UNIREF100
  • Identity: 80.7
  • Coverage: 280.0
  • Bit_score: 448
  • Evalue 6.50e-123
  • rbh
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:EJL30929.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; similarity UNIPROT
DB: UniProtKB
  • Identity: 72.0
  • Coverage: 279.0
  • Bit_score: 389
  • Evalue 2.90e-105
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 68.6
  • Coverage: 280.0
  • Bit_score: 378
  • Evalue 1.40e-102

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 843
ATGAACCGGGCGGCCTGCCTGATCTTTGACGCGCAGCGGACGGGTCTGCTGCGCGTCGCCTACCGGATGCTTGGCTCGATGGCCGATGCCGAGGACATTGTGCAGGAAGCCTTTCTGCGCTGGCGCGGCGTGGATCATGCGCAGGTCGGCGTGCCCGCCGCCTTTCTGCGCCGGATCGTTACGCGGCTGTGCCTCGATCATCTCAAGTCCGCCCGGGTTCAGCGTGAAAGCTATATCGGCCCGTGGCTGCCCGAACCGGCGGTCGAGGAAGATCTGTGCGAGGATGTGACCCTGCCCCTGCTGCTGGCCCTGGAGCGCCTGTCGCCGCTGGAGCGGGCGGCCTTTCTGCTGCATGATGTGTTTGGCGAGAGCTTTGAGGAAGTCGCCCTCGTGCTTGATCGCAAGGAGGCGGCCTGCCGCCAACTGGTCCTGCGCGCCCGCACCCATGTGCGCGATGCAAGGCCGCGCTTTCCCGTCAATCACCATCAGGGCAAGGCCATAGCCAACGCCTTTTTCGAAGCGTCACAAAAAGGCGATATGGCGCAATTGAGCGCACTTCTGGCGCAGGATGTGCAGTTCCATTCCGATGGCGGCGGGAAACGGCCAGCGGTCGCGCGCATCCTGCATGGCGCGGACGAATTCCTGCGGGCACACGCGGCGCTGGCCCGGCTGCGCCGCGCTCCCTCAGAGCTTGTGCGCGTGGCCACGATCAACGGCCTGCCCGGTTTCATCACGCGCGAGCCCGATGGCTTGCTGCAGACCACCGCGCTGCTGGTCGAGGATGGGCGCATCCGGGCGATCTATGTGACGCGCAATCCCGACAAGCTGCGCCGGGTACATTGA
PROTEIN sequence
Length: 281
MNRAACLIFDAQRTGLLRVAYRMLGSMADAEDIVQEAFLRWRGVDHAQVGVPAAFLRRIVTRLCLDHLKSARVQRESYIGPWLPEPAVEEDLCEDVTLPLLLALERLSPLERAAFLLHDVFGESFEEVALVLDRKEAACRQLVLRARTHVRDARPRFPVNHHQGKAIANAFFEASQKGDMAQLSALLAQDVQFHSDGGGKRPAVARILHGADEFLRAHAALARLRRAPSELVRVATINGLPGFITREPDGLLQTTALLVEDGRIRAIYVTRNPDKLRRVH*