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scnpilot_cont_500_p_scaffold_1617_8

Organism: SCNPILOT_CONT_500_P_Pseudonocardia_73_10

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(7731..8276)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CXV8_PSEUX similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 181.0
  • Bit_score: 202
  • Evalue 4.00e-49
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 58.0
  • Coverage: 174.0
  • Bit_score: 202
  • Evalue 1.10e-49
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA28764.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudono similarity UNIPROT
DB: UniProtKB
  • Identity: 58.0
  • Coverage: 174.0
  • Bit_score: 202
  • Evalue 5.60e-49

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Taxonomy

Pseudonocardia dioxanivorans → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 546
GTGGGCCAGCCGACCGACGCCGAGCTGCTCGCCGCCCACCGGGCCGGCGACGCGGAGGCGTTCGGGCGGCTCGTCGGCCGGCACACCGACCGGATGTGGGGGGTGGCGGTGCGCACCCTCGGGCACCGCGACGACGCCGCGGACGCCGTGCAGGAGGCCCTGCTGGCCGCCCTGCGCGGGGCCGGTTCCTTCCGCGGTGAGGCGTCGGTGCGCACCTGGCTCAACCGCATCGTCGTCAACACCTGCATCGACCGCATGCGCCACGAACGCGTCCGGCCCACGGTGCCGCTGCCGCCCTGGGAGCTGCCGGACCGCGGCGCCGACCCGGCCACGCGGCTGGCCACCCGGATGGAGGTCACCGACGCGCTGGCCCTGCTGCCGCCCGAGCAACGGCTGGCGGTGGTGCTGGTCGACATGGAAGGTTGGGCGCTCAGCGAGGTGGCCGAGGCCACGGAGGCACCGGTGGGCACCGTGAAGAGCCGCTGTGCGCGGGGCCGCGCCCGGCTCGCGGTGCTGCTGGGGCACCTGAGGGAGGAGGTCCGATGA
PROTEIN sequence
Length: 182
VGQPTDAELLAAHRAGDAEAFGRLVGRHTDRMWGVAVRTLGHRDDAADAVQEALLAALRGAGSFRGEASVRTWLNRIVVNTCIDRMRHERVRPTVPLPPWELPDRGADPATRLATRMEVTDALALLPPEQRLAVVLVDMEGWALSEVAEATEAPVGTVKSRCARGRARLAVLLGHLREEVR*