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scnpilot_cont_500_p_scaffold_5906_6

Organism: SCNPILOT_CONT_500_P_Pseudonocardia_73_10

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(4577..5332)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Corynebacterium ulceribovis RepID=UPI00037D93B4 similarity UNIREF
DB: UNIREF100
  • Identity: 48.0
  • Coverage: 179.0
  • Bit_score: 162
  • Evalue 6.40e-37
RNA polymerase sigma factor SigD {ECO:0000313|EMBL:EGD23183.1}; TaxID=525370 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus equi ATCC 33707.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.3
  • Coverage: 184.0
  • Bit_score: 156
  • Evalue 6.40e-35
SigD; RNA Sigma factor, sigma 70 type, group 4 (ECF) similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 219.0
  • Bit_score: 155
  • Evalue 2.20e-35

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Taxonomy

Rhodococcus equi → Rhodococcus → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 756
GTGCACCGGCCGCACCGGCCCCTGGACGACGATCCGGCCGGCGGCCCGCACCCGCTGATCCGTTCGGCCGCGGGCGGCGACATCGATTCGTGCCCCGCGGACTGGGCCATCTGCAGTACCGTCCCCGGATGGCCCGTGGTAGCCCGACCGTCGGACGGTAACGCCCTCGTGACGGATGCCCCGAACAGTCCGGCGGCCGAGCTCCGCCGGCTCGTACCGGCCGCGCAGGCGGGTGATCGCGCCGCCCTCGACCAGGTGCTGCGCCTCGTCCACCCCATCGTGCTGCGGGGTTGTCGGGCCCGGATGGGCTGCGGCCACGGCCACCTCGACCCGGAGGACGTCGCGCAGGACGTGCTGTGCGCGATCGCCGACGGCATCGGCCGGTTCGACCCCGTCCGCCCGTTCCTGGGCTGGGTCGCGGCCATCACCGGCCACAAGGCGTCGGATGCGTTCCGCCGGCACTACCGCGACCCCTCCAGCCCCGTCGACGAGGTGCCCGAGCACGTCGACTCCGGCGACACGCCGGAGCCCGCGCTGCTGCGGTCGGAGCTGGCCGATGAGCTGCGCGTCCTGCTCGCGCAGCTCCCGGAGGTCCACCAGTCGATCCTCGTACTACGGCTCATCGAGCGCGTCTCCGCCGCGGAGACGGCCGAGATGCTCGGCATGACCGCGGGCAGCGTCCGCGTGGCCCAGCACCGTGCGCTGCGCCGCCTGCGTGAGCTGGTCGCCGGCGGCGCGTCCCTCCCGAGCGGCTGA
PROTEIN sequence
Length: 252
VHRPHRPLDDDPAGGPHPLIRSAAGGDIDSCPADWAICSTVPGWPVVARPSDGNALVTDAPNSPAAELRRLVPAAQAGDRAALDQVLRLVHPIVLRGCRARMGCGHGHLDPEDVAQDVLCAIADGIGRFDPVRPFLGWVAAITGHKASDAFRRHYRDPSSPVDEVPEHVDSGDTPEPALLRSELADELRVLLAQLPEVHQSILVLRLIERVSAAETAEMLGMTAGSVRVAQHRALRRLRELVAGGASLPSG*