ggKbase home page

scnpilot_p_inoc_scaffold_95_3

Organism: SCNpilot_P_inoc_Thiobacillus_strain2_63_34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 2
Location: comp(1935..3233)

Top 3 Functional Annotations

Value Algorithm Source
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] id=12497417 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 433.0
  • Bit_score: 864
  • Evalue 5.80e-248
  • rbh
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-) similarity KEGG
DB: KEGG
  • Identity: 83.8
  • Coverage: 432.0
  • Bit_score: 730
  • Evalue 2.20e-208
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 432.0
  • Bit_score: 730
  • Evalue 1.10e-207

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1299
ATGAGCCCCGTCGTCGACATCCTTTCCCTCGACCACGAGGGCCACGGCGTTGCGCGCATCGACGGCAAGGTTACCTTCGTCGACGGCGCGCTGGCAGGCGAACGCGCCGAAATCGCCGTCTACCGCAAGCACGCCAAGTACAACTCCGCCAATGCGGTCGGCATCCTCAAGGCCAGCGCGCAACGGGCCGACCCGCAGTGCCGGTATTTCGGCCGCTGCGGCGGCTGCTCGATGCAGCATCTGGAAGCCGGTGCCCAGGTCGCCGCCAAGCAGCGCGTGCTGGAGGAAAACCTCGCGCGCATCGGCAAGGTGACGCCCGAACTGATCCTGCGCGCGCTGCACGGCCCCGCCTGGCACTACCGCCACCGTGCGCGCCTGTCGGTACGGCGCGTGGACAAGAAAGGCGGCATCCTGGTCGGCTTCCACGAAAAGCGCTCCAGCTTCATCGCCGACATGGACGGCTGCGAGGTGCTCACGCCCGACGTCTCGGCGCTGATCCGGCCGTTGCGCGACCTGATTCTGGGCTTGTCGAACTCGGACCGCATTCCGCAGATCGAGATCGCGGCCGGCGAGCGCATCACCGTTCTGGTGTTCCGCCTGCTCGAACCCTGGACCGACGAAGACGCCGTCCGGATACGGACCTTTGCGGAACGGCACGGCATCCAGATATGGGAGCAGCGCAAGGGCCCCGAGACCGCGCGGCCGTTCTGGCCGCTCGATGCGCCCGAACTCGGCTACAGCCTGCCCGAATTCGACCTGGTCATGCCGTTCCGGCCGACCGAGTTCACCCAGGTCAATACCGCGATCAACCGCGCCCTGGTCAGCCGCGCCCTGCGCCTGCTCGCCCCGCGGCCGGGCGAGCGCATCGTCGACCTGTTCTGCGGGCTGGGCAATTTCACCCTGCCGATCGCGCGCAGCGGCGCCGCAGTGCACGGCATCGAAGGCAGCGGGGAACTCGTCGCCCGGGCGCGCGAAAACGCCCTGCGCAACCGCCTGCCGAACGCAACGTTCGCAGTGGACAACCTGTTCGAAATGACGCCCGAGAAATTCGCCGCGCTGGGCCCGATCGACAAGCTGCTGATCGACCCGCCCCGTTCCGGCGCCATCGAGGTCGTGAAGGCCCTGCCGGACACGGGTGGGCCGCACCGCCTCGTCTACGTCTCCTGCGACCCTGCCACCCTGGCCCGCGACGCCGAGGTGCTGGTGCATGTGAAGGGCTACCGTCTCAAGGCCGCAGGCGTTGCCAACATGTTCCCGCACACGGCACACGTCGAATCGATCGCGCTTTTCGAGCGCTGA
PROTEIN sequence
Length: 433
MSPVVDILSLDHEGHGVARIDGKVTFVDGALAGERAEIAVYRKHAKYNSANAVGILKASAQRADPQCRYFGRCGGCSMQHLEAGAQVAAKQRVLEENLARIGKVTPELILRALHGPAWHYRHRARLSVRRVDKKGGILVGFHEKRSSFIADMDGCEVLTPDVSALIRPLRDLILGLSNSDRIPQIEIAAGERITVLVFRLLEPWTDEDAVRIRTFAERHGIQIWEQRKGPETARPFWPLDAPELGYSLPEFDLVMPFRPTEFTQVNTAINRALVSRALRLLAPRPGERIVDLFCGLGNFTLPIARSGAAVHGIEGSGELVARARENALRNRLPNATFAVDNLFEMTPEKFAALGPIDKLLIDPPRSGAIEVVKALPDTGGPHRLVYVSCDPATLARDAEVLVHVKGYRLKAAGVANMFPHTAHVESIALFER*