ggKbase home page

DolZOral124_scaffold_612

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_612_1
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1..81)
-----------------
DNA (81bp)
protein (27aa)
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost
DolZOral124_scaffold_612_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(116..1465)
-----------------
DNA (1350bp)
protein (450aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5GDM5_9CLOT rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo
signal recognition particle protein
DolZOral124_scaffold_612_3
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1475..1819)
-----------------
DNA (345bp)
protein (115aa)
Helix-turn-helix protein, YlxM/p13 family n=2 Tax=Dorea RepID=A6BIC8_9FIRM
UPF0122 protein BN651_00140 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea lo
hypothetical protein
DolZOral124_scaffold_612_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2053..2835
-----------------
DNA (783bp)
protein (261aa)
Formate/nitrite transporter family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VCF2_CLOBI
Formate/nitrite transporter family protein {ECO:0000313|EMBL:EQK44885.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Cl
hypothetical protein
DolZOral124_scaffold_612_5
unknown

Not on your lists

comp(2932..4746)
-----------------
DNA (1815bp)
protein (605aa)

This feature has no annotations

DolZOral124_scaffold_612_6
Cetobacterium somerae, Cetobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

5088..7049
-----------------
DNA (1962bp)
protein (654aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036C502A
5'-nucleotidase protein {ECO:0000313|EMBL:ERT67871.1}; TaxID=1319815 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Cetobacterium.;" source="Cetobacterium somerae ATCC BAA-474.;"
phosphatase/nucleotidase
DolZOral124_scaffold_612_7
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7159..8433)
-----------------
DNA (1275bp)
protein (425aa)
Amidohydrolase family protein n=1 Tax=Eubacterium sp. CAG:251 RepID=R6RG54_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CDC33437.1}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubac
amidohydrolase
DolZOral124_scaffold_612_8
Oribacterium parvum, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8442..9587)
-----------------
DNA (1146bp)
protein (382aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. ACB1 RepID=G9WQ52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL09512.1}; TaxID=796943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium parvum ACB1.;"
basic membrane lipoprotein
DolZOral124_scaffold_612_9
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9714..11906)
-----------------
DNA (2193bp)
protein (731aa)
1,4-alpha-glucan branching enzyme GlgB id=1743560 bin=GWE2_Clostridiales_32_10 species=Clostridium sp. ASF356 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
1,4-alpha-glucan branching protein
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_10
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12136..14778)
-----------------
DNA (2643bp)
protein (881aa)
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Clostridium sp. CAG:264 RepID=R5K4N0_9CLOT
Tax=BJP_IG2157_Clostridiales_35_16
DolZOral124_scaffold_612_11
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14789..16066)
-----------------
DNA (1278bp)
protein (426aa)
Cystathionine gamma-lyase n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JT42_9FIRM
Cystathionine gamma-lyase {ECO:0000313|EMBL:CDB65933.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacteri
Cystathionine beta-lyase family protein involved in aluminum resistance
DolZOral124_scaffold_612_12
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16408..18567)
-----------------
DNA (2160bp)
protein (720aa)
Uncharacterized protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R6S1_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EPR13677.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens
RNA binding S1 domain-containing protein
DolZOral124_scaffold_612_13
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18580..19875)
-----------------
DNA (1296bp)
protein (432aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
putative aminopeptidase 2 (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium ultunense Esp RepID=M1ZBQ2_9CLOT
DolZOral124_scaffold_612_14
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19888..20679)
-----------------
DNA (792bp)
protein (264aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2L011_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:ERJ82774.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" sourc
short chain dehydrogenase/reductase family oxidoreductase
DolZOral124_scaffold_612_15
Haloplasma contractile, Haloplasma, Haloplasmatales, Bacteria

Not on your lists

comp(20863..22203)
-----------------
DNA (1341bp)
protein (447aa)
Oxygen-independent coproporphyrinogen III oxidase protein {ECO:0000313|EMBL:ERJ11109.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ERJ11109.1};; TaxID=1033810 species="Bacteria; Haloplasmatales; Haloplasmataceae
hemZ; coproporphyrinogen III oxidase (EC:1.3.3.3)
Oxygen-independent coproporphyrinogen III oxidase protein n=1 Tax=Haloplasma contractile SSD-17B RepID=U2FIP1_9BACT
DolZOral124_scaffold_612_16
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22256..22882)
-----------------
DNA (627bp)
protein (209aa)
Hydroxyacylglutathione hydrolase n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KXG3_9FIRM
beta-lactamase
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_17
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22882..25119)
-----------------
DNA (2238bp)
protein (746aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
(P)ppGpp synthetase, RelA/SpoT family n=3 Tax=Clostridiales RepID=D4LFZ5_9FIRM rbh
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_18
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25178..25690)
-----------------
DNA (513bp)
protein (171aa)
Adenine phosphoribosyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JHL2_CELLD
adenine phosphoribosyltransferase
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_19
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25709..27730)
-----------------
DNA (2022bp)
protein (674aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ id=1970978 bin=GWD2_Clostridiales_32_59 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_20
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27732..29888)
-----------------
DNA (2157bp)
protein (719aa)
Protein-export membrane protein SecD n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2L4_9FIRM rbh
protein-export membrane protein SecD
Tax=BJP_IG2157_Clostridiales_35_16
DolZOral124_scaffold_612_21
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29897..31258)
-----------------
DNA (1362bp)
protein (454aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KXZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66947.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
hypothetical protein
DolZOral124_scaffold_612_22
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31315..31467)
-----------------
DNA (153bp)
protein (51aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=C4Z1M6_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF11288.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium
DolZOral124_scaffold_612_23
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31681..32793)
-----------------
DNA (1113bp)
protein (371aa)
ABC transporter related n=1 Tax=Roseburia sp. CAG:303 RepID=R7IR57_9FIRM
ABC transporter related {ECO:0000313|EMBL:CDE53152.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp
ABC transporter-like protein
DolZOral124_scaffold_612_24
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33261..34085)
-----------------
DNA (825bp)
protein (275aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LMT3_9FIRM
hypothetical protein
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_25
Eubacterium sp. CAG:274, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34131..34856)
-----------------
DNA (726bp)
protein (242aa)
WecB/TagA/CpsF family glycosyl transferase (EC:2.4.1.187)
Glycosyl transferase WecB/TagA/CpsF family n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P468_9FIRM
Glycosyl transferase WecB/TagA/CpsF family {ECO:0000313|EMBL:CDC19113.1}; TaxID=1262888 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;"
DolZOral124_scaffold_612_26
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34853..35443)
-----------------
DNA (591bp)
protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VV50_CLOSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC69468.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium su
DolZOral124_scaffold_612_27
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35571..36845)
-----------------
DNA (1275bp)
protein (425aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZJL5_9CLOT
cell envelope-related transcriptional attenuator
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_28
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36865..37905)
-----------------
DNA (1041bp)
protein (347aa)
Cell envelope-related transcriptional attenuator id=2165898 bin=GWE2_Clostridiales_32_10 species=Clostridium sp. ASF356 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
cell envelope-related transcriptional attenuator
Tax=BJP_IG2102_Clostridiales_34_350
DolZOral124_scaffold_612_29
unknown

Not on your lists

comp(38007..38096)
-----------------
DNA (90bp)
protein (30aa)

This feature has no annotations

DolZOral124_scaffold_612_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38112..39551)
-----------------
DNA (1440bp)
protein (480aa)
pepD; aminoacyl-histidine dipeptidase (EC:3.4.13.3)
Aminoacyl-histidine dipeptidase n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KZ50_CLOBM
Aminoacyl-histidine dipeptidase {ECO:0000313|EMBL:ACA53603.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (stra
Displaying items 1-30 of 46 in total

View Taxonomy