ggKbase home page

ar4r2_scaffold_19257_6

Organism: ALUMROCK_MS4_Thiothrix_nivea-related_50_537

near complete RP 42 / 55 MC: 3 BSCG 45 / 51 MC: 8 ASCG 12 / 38 MC: 4
Location: comp(1432..2472)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 76.9
  • Coverage: 307.0
  • Bit_score: 498
  • Evalue 9.40e-138
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZ74_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 76.9
  • Coverage: 307.0
  • Bit_score: 498
  • Evalue 6.70e-138
TrmA family RNA methyltransferase similarity KEGG
DB: KEGG
  • Identity: 50.2
  • Coverage: 309.0
  • Bit_score: 305
  • Evalue 1.40e-80

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1041
ATGAGTCGCAGCAGAAAACCCCGTGGCGTAAAAAACAGCCCACTTGTCGAAACCACTATCGAATCCCTCACGCTTGACGGTCAGGGTGTCGCCCACATTGACGGCAAAACCGTATTCATTGACGGTGCGTTGCCGGGTGAAACCGTCGCTTTTCGCTACACCTCTTACAAAGCTAAACACGACGAAGGCAAGGTCGAAACCGTCCTTACGCCATCACTAGAACGGGTAGAACCGCGTTGCGAACACTTCGGCGTATGCGGCGCGTGTAGCTGGCAACACATTTCGCTGGAAGGGCAGATTCGCCATAAACAGCAAGCCATGCTCAATAATCTTAAATATATCGGCAAAGTCGAACCTGAAACAGTGCTTGAACCCTTGACCGCAGAAGGTTGGGCATACCGTCGTAAAGCCCGTTTGGGGGCGCGTTGGGTACGCAAGAAAGAGAAAGCGTTGGTGGGGTTCCGCGAAAAAGAGGGCGGTTTCCTCGCAGAACTCAACCGTTGCGAAATTTTACACCCCAGCATCGGCGAGCATCTCACGGATTTTCAAGCTTTAGTGGGTGGCATGGAAGCGCGTGAAACCATTCCGCAAATCGAAGTGGCAGTGGGTGATAATGCCACTGCTCTGGTGGTGCGTCACATGGAACCCTTGTCTGACACAGACACGCAAAAATTAATCGACTTCGCCCGCGAGTGGGATTATCAGCTTTATTTGCAGCCTAAAGGCCCTGAAACTGTTCACTGCATTTATCCTGAAAACCCGACGTTGTATTACGAGCATCCGCAGTTCAATACCAAAGTAGGTTTCGTCCCGCTCGACTTTTTCCAAGTTAATCAGCCGCTCAACCGTAAAATGGTAGCGCGTGCCTTGGAATTGCTTGCACCTCGCCCAAGTGATTGGTGTGGAAGGCGATATGGCGATGGTGGAACGCGCTCGTGCGGCGGCGCACGCCAACGACATTCACAACACCGATTACTACGCTTGCAACCTGATGGGCGAGGATTTACACCGCGAACCGTGGTTGAAAAAACACCGTTATGA
PROTEIN sequence
Length: 347
MSRSRKPRGVKNSPLVETTIESLTLDGQGVAHIDGKTVFIDGALPGETVAFRYTSYKAKHDEGKVETVLTPSLERVEPRCEHFGVCGACSWQHISLEGQIRHKQQAMLNNLKYIGKVEPETVLEPLTAEGWAYRRKARLGARWVRKKEKALVGFREKEGGFLAELNRCEILHPSIGEHLTDFQALVGGMEARETIPQIEVAVGDNATALVVRHMEPLSDTDTQKLIDFAREWDYQLYLQPKGPETVHCIYPENPTLYYEHPQFNTKVGFVPLDFFQVNQPLNRKMVARALELLAPRPSDWCGRRYGDGGTRSCGGARQRHSQHRLLRLQPDGRGFTPRTVVEKTPL*