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RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_1
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

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3..299
-----------------
DNA (297bp)
protein (99aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_2
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

296..1051
-----------------
DNA (756bp)
protein (252aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_3
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(1083..1691)
-----------------
DNA (609bp)
protein (203aa)
peptidase E (EC:3.4.13.21)
Peptidase S51 dipeptidase E id=4838842 bin=GWC2_OD1_43_27 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_4
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1708..2112)
-----------------
DNA (405bp)
protein (135aa)
seg id=5102547 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(2282..2644)
-----------------
DNA (363bp)
protein (121aa)
id=2899561 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_6
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

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comp(2652..7295)
-----------------
DNA (4644bp)
protein (1548aa)
Uncharacterized protein (Fragment) id=2899562 bin=GWA1_ZB2_49_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_7
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(7389..8804)
-----------------
DNA (1416bp)
protein (472aa)
Lamin A/C globular tail domain id=5803059 bin=OD1_GWC2_34_28 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_8
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8959..9954
-----------------
DNA (996bp)
protein (332aa)
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] id=5803344 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Sugar kinase, ribokinase family
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_9
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(10083..11090)
-----------------
DNA (1008bp)
protein (336aa)
transketolase; K00615 transketolase [EC:2.2.1.1] id=5803342 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Transketolase, central region
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_10
R_OD1_Nomurabacteria_39_18, Nomurabacteria, Parcubacteria, Bacteria

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comp(11087..11962)
-----------------
DNA (876bp)
protein (292aa)
tktB; transketolase N-terminal domain protein (EC:2.2.1.1) id=15189839 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Transketolase protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_11
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12024..12368
-----------------
DNA (345bp)
protein (115aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_12
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12413..12607)
-----------------
DNA (195bp)
protein (65aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_13
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12635..13357)
-----------------
DNA (723bp)
protein (241aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase id=5227054 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_14
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13350..13823)
-----------------
DNA (474bp)
protein (158aa)
ribose-5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] id=5803339 bin=OD1_GWC2_34_28 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ribose-5-phosphate isomerase B
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_15
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13835..14860)
-----------------
DNA (1026bp)
protein (342aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
id=5227056 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_16
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14929..15726)
-----------------
DNA (798bp)
protein (266aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_17
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(15744..16181)
-----------------
DNA (438bp)
protein (146aa)
NUDIX hydrolase n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UBV0_9CYAN
NUDIX hydrolase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_18
R_RIF_OD1_06_42_22, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

16227..19469
-----------------
DNA (3243bp)
protein (1081aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_19
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(19475..19696)
-----------------
DNA (222bp)
protein (74aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_20
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(19750..20283)
-----------------
DNA (534bp)
protein (178aa)
Peptidyl-tRNA hydrolase id=5227157 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Peptidyl-tRNA hydrolase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_21
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

20362..20973
-----------------
DNA (612bp)
protein (204aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
signal peptidase I
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_22
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

20976..22298
-----------------
DNA (1323bp)
protein (441aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidyl-tRNA synthetase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYX5_9BACT
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_23
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

22363..22926
-----------------
DNA (564bp)
protein (188aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] id=5227160 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
def; Peptide deformylase (PDF) (Polypeptide deformylase) (EC:3.5.1.88)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_24
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

22964..23806
-----------------
DNA (843bp)
protein (281aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PW56_9BACT
methionyl-tRNA formyltransferase
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_25
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(23803..24201)
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXH8_9BACT
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_26
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(24223..24828)
-----------------
DNA (606bp)
protein (202aa)
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_27
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(24841..25326)
-----------------
DNA (486bp)
protein (162aa)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) RepID=I4B344_TURPD
Peptide methionine sulfoxide reductase msrA
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_28
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

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comp(25442..25795)
-----------------
DNA (354bp)
protein (118aa)
methionine sulfoxide reductase B (EC:1.8.4.12)
methionine sulfoxide reductase B n=1 Tax=Pontibacter roseus RepID=UPI000372CB2B
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_29
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25792..27723)
-----------------
DNA (1932bp)
protein (644aa)
id=5227494 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
glycosidase ph1107-related protein
RIFCSPHIGHO2_01_FULL_OD1_37_110_rifcsphigho2_01_scaffold_2619_30
RLO_OD1_Nomurabacteria_37_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(27727..28860)
-----------------
DNA (1134bp)
protein (378aa)
glycosidase ph1107-related protein id=5803228 bin=OD1_GWC2_34_28 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
glycosidase ph1107-related protein
Displaying items 1-30 of 40 in total

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