ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_1
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

144..422
-----------------
DNA (279bp)
protein (93aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
hypothetical protein, conserved id=133560 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_2
GWF2_OD1_40_12, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(472..669)
-----------------
DNA (198bp)
protein (66aa)
Cold shock-like protein {ECO:0000313|EMBL:KKR43202.1}; TaxID=1618776 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWF2_40_12.;"
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family) id=5802143 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_3
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(840..1523)
-----------------
DNA (684bp)
protein (228aa)
rluF; ribosomal large subunit pseudouridine synthase F; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
Ribosomal large subunit pseudouridine synthase F id=2192955 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rluF; ribosomal large subunit pseudouridine synthase F
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_4
GWA2_OD1_41_25_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(1516..2724)
-----------------
DNA (1209bp)
protein (403aa)
ABC transporter, permease protein {ECO:0000313|EMBL:KKS04068.1}; TaxID=1618736 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_41_25.;"
ABC transporter, permease protein id=4731804 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
multidrug ABC transporter substrate-binding protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_5
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(2721..3422)
-----------------
DNA (702bp)
protein (234aa)
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
PhnL; ABC transporter; K02003 putative ABC transport system ATP-binding protein id=5095823 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_6
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(3431..5128)
-----------------
DNA (1698bp)
protein (566aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=15190297 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RND family efflux transporter MFP subunit
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_7
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(5219..6169)
-----------------
DNA (951bp)
protein (317aa)
cell wall-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
conserved repeat domain protein id=134098 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
cell wall-binding protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_8
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(6341..6823)
-----------------
DNA (483bp)
protein (161aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
Putative uncharacterized protein id=3305474 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_9
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7140..7787
-----------------
DNA (648bp)
protein (216aa)
PAS/PAC sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
Putative PAS/PAC sensor protein id=2130088 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
PAS/PAC sensor hybrid histidine kinase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_10
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

7784..9535
-----------------
DNA (1752bp)
protein (584aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2T0_9BACT
PAS/PAC sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
PAS/PAC sensor hybrid histidine kinase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_11
GWC2_OD1_41_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

9566..9961
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZB96_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:KKS24040.1}; TaxID=1618755 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_41_8.;"
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_12
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(10090..10338)
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI0003768335
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_13
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

10384..10854
-----------------
DNA (471bp)
protein (157aa)
Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=5803259 bin=OD1_GWC2_34_28 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction resolvase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_14
GWC2_OD1_41_8, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

10851..11180
-----------------
DNA (330bp)
protein (110aa)
Methionyl-tRNA synthetase n=1 Tax=sediment metagenome RepID=D9PKR8_9ZZZZ
Methionyl-tRNA synthetase {ECO:0000313|EMBL:KKS24038.1}; TaxID=1618755 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_41_8.;"
methionyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_15
GWA2_OD1_41_25_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

11216..12307
-----------------
DNA (1092bp)
protein (364aa)
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:KKS04058.1}; TaxID=1618736 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_41_25.;"
Type IV pilus assembly protein PilM id=5227483 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Cell division protein FtsA
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_16
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12314..12856
-----------------
DNA (543bp)
protein (181aa)
seg Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
seg id=5803263 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_17
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12858..13397
-----------------
DNA (540bp)
protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_18
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

13407..13715
-----------------
DNA (309bp)
protein (103aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_19
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14023..14478)
-----------------
DNA (456bp)
protein (152aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_20
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14490..16364)
-----------------
DNA (1875bp)
protein (625aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_21
GWA1_OD1_36_15, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(16600..17889)
-----------------
DNA (1290bp)
protein (430aa)
Recombinase {ECO:0000313|EMBL:KKP97876.1}; TaxID=1618728 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_36_15.;"
recombinase id=5226883 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
recombinase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_22
GWC2_OD1_35_35, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

18049..21198
-----------------
DNA (3150bp)
protein (1050aa)
Adenine specific DNA methyltransferase n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PIV2_MURRD
Adenine-specific DNA methyltransferase {ECO:0000313|EMBL:KKP78408.1}; TaxID=1618751 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_35_35.;"
adenine specific DNA methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_23
RBG_13_WOR-2_44_8b_curated, WOR-2, Bacteria

Not on your lists

21203..24028
-----------------
DNA (2826bp)
protein (942aa)
KAP P-loop domain protein n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DS50_9EURY
KAP P-loop domain protein Tax=RBG_13_WOR-2_44_8b_curated
KAP family P-loop domain protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_24
GWF2_OD1_38_8, Parcubacteria, Bacteria

Not on your lists

comp(24079..24678)
-----------------
DNA (600bp)
protein (200aa)
Tax=GWF2_OD1_38_8
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_25
GWE2_OD1_40_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

24780..25025
-----------------
DNA (246bp)
protein (82aa)
Endo/excinuclease amino terminal domain protein n=1 Tax=Bermanella marisrubri RepID=Q1MZE8_9GAMM id=8806 bin=ACD15 species=Bermanella marisrubri genus=Bermanella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Endo/excinuclease amino terminal domain protein {ECO:0000313|EMBL:KKR37101.1}; TaxID=1618766 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWE2_40_10.;"
excinuclease ABC subunit C domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_26
R_OD1_Nomurabacteria_41_52b, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25069..25641)
-----------------
DNA (573bp)
protein (191aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ABU1_9BACT
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_52b_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_27
R_OD1_Nomurabacteria_41_52b, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25653..26978)
-----------------
DNA (1326bp)
protein (442aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_52b_curated
DNA methylase N-4/N-6 domain protein id=2002559 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_28
GWA1_OD1_47_8, Parcubacteria, Bacteria

Not on your lists

27699..28289
-----------------
DNA (591bp)
protein (197aa)
Uncharacterized protein n=1 Tax=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) RepID=D8L145_TREPZ
Putative uncharacterized protein Tax=GWA1_OD1_47_8
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_29
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

28301..28543
-----------------
DNA (243bp)
protein (81aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
RIFCSPHIGHO2_01_FULL_OD1_41_91_rifcsphigho2_01_scaffold_2694_30
RLO_OD1_Nomurabacteria_41_10, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

28547..29260
-----------------
DNA (714bp)
protein (238aa)
Uncharacterized protein n=1 Tax=Vibrio sp. HENC-03 RepID=K5UR87_9VIBR
hypothetical protein; K09968 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_41_10_curated
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy