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RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_1
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1..474)
-----------------
DNA (474bp)
protein (158aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0I1_HALOH
hypothetical protein; K09776 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_2
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(478..822)
-----------------
DNA (345bp)
protein (115aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_3
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1097..1534)
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI00037EA455
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_4
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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1621..2541
-----------------
DNA (921bp)
protein (307aa)
seg Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
seg id=5803223 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_5
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2518..2979)
-----------------
DNA (462bp)
protein (154aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EQK2_CHLPB id=84756 bin=ACD56 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
tRNA/rRNA methyltransferase SpoU Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
tRNA/rRNA methyltransferase SpoU
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_6
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(2960..3937)
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DP53_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_7
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(3939..4727)
-----------------
DNA (789bp)
protein (263aa)
periplasmic immunogenic protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Putative uncharacterized protein id=1897378 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
periplasmic immunogenic protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_8
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4812..5027)
-----------------
DNA (216bp)
protein (72aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_9
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

5227..5550
-----------------
DNA (324bp)
protein (108aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_10
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5601..6803)
-----------------
DNA (1203bp)
protein (401aa)
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036CFC48
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_11
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(6796..7368)
-----------------
DNA (573bp)
protein (191aa)
ruvA; Holliday junction resolvasome DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ruvA; Holliday junction resolvasome DNA-binding subunit
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_12
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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7404..9434
-----------------
DNA (2031bp)
protein (677aa)
UvrABC system protein B n=3 Tax=Geobacillus RepID=E3IBG5_GEOS0
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
excinuclease ABC subunit B
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_13
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

9482..9727
-----------------
DNA (246bp)
protein (82aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_14
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


9826..10083
-----------------
DNA (258bp)
protein (86aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371EFDE
rpsT; ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
rpsT; ribosomal protein S20
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_15
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10073..10927)
-----------------
DNA (855bp)
protein (285aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_16
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10930..11304)
-----------------
DNA (375bp)
protein (125aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003622DB7
winged helix family two component transcriptional regulator; K10697 two-component system, OmpR family, response regulator RpaA Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
winged helix family two component transcriptional regulator
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_17
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(11310..13916)
-----------------
DNA (2607bp)
protein (869aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
DNA polymerase id=2934196 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
DNA polymerase I
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_18
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

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comp(13909..14379)
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Putative uncharacterized protein id=4731870 bin=GWC2_OD1_43_27 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_19
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14483..14974)
-----------------
DNA (492bp)
protein (164aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_20
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

15114..16784
-----------------
DNA (1671bp)
protein (557aa)
general secretory pathway protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
general secretory pathway protein E
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_21
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

16974..17987
-----------------
DNA (1014bp)
protein (338aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
id=5227412 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Holliday junction DNA helicase RuvB
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_22
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

17984..18226
-----------------
DNA (243bp)
protein (81aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_23
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

18227..18697
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein
seg 84..95 Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
seg 84..95 id=16708 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
RIFCSPHIGHO2_01_FULL_OD1_43_100_rifcsphigho2_01_scaffold_26076_24
RLO_OD1_Giovannonibacteria_43_11c, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

18701..18787
-----------------
DNA (87bp)
protein (29aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_43_11c_curated
Displaying 24 items

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