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RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_1
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(2..1474)
DNA (1473bp) protein (491aa)
transcription-repair coupling factor (EC:3.6.4.-) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
transcription-repair coupling factor (EC:3.6.4.-)
Transcription-repair coupling factor id=2824521 bin=GWC1_OD1_38_17 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_2
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(1517..2080)
DNA (564bp) protein (188aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase id=4731853 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_3
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

2130..2732
DNA (603bp) protein (201aa)
putative signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Signal peptidase I id=1899026 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
putative signal peptidase I
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_4
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


2913..4217
DNA (1305bp) protein (435aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
histidyl-tRNA synthetase (EC:6.1.1.21)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036B65C8
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_5
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4221..4568
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035E0E9A
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
histidine triad (HIT) protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_6
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4605..4838
DNA (234bp) protein (78aa)
id=2824477 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
id=2824477 bin=GWC1_OD1_38_17 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_7
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4942..5400
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T5M1_THEA1
hypothetical protein; K09117 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_8
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

5397..5801
DNA (405bp) protein (135aa)
Endoribonuclease YbeY n=1 Tax=uncultured bacterium RepID=K2CCV9_9BACT
Putative metalloprotease; K07042 probable rRNA maturation factor Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
Putative metalloprotease
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_9
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

5829..7064
DNA (1236bp) protein (412aa)
Cell division protein ftsA n=1 Tax=uncultured bacterium RepID=K1YT84_9BACT
ftsA; cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
ftsA; cell division protein FtsA
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_10
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

7155..8288
DNA (1134bp) protein (378aa)
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
ckr:CKR_1235 cell division protein FtsZ; K03531 cell division protein FtsZ id=2686 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
cell division protein FtsZ
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_11
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(8311..8457)
DNA (147bp) protein (49aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_12
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

8727..11462
DNA (2736bp) protein (912aa)
ribonucleoside-diphosphate reductase class II (EC:1.17.4.1) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
ribonucleoside-diphosphate reductase class II (EC:1.17.4.1)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI00036671DB
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_13
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(11432..11572)
DNA (141bp) protein (47aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_14
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

11628..12149
DNA (522bp) protein (174aa)
cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
cob(I)alamin adenosyltransferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
cob(I)alamin adenosyltransferase id=15189953 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_15
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12186..12581
DNA (396bp) protein (132aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_16
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

12654..13136
DNA (483bp) protein (161aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_17
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

13934..15457
DNA (1524bp) protein (508aa)
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA internalization-related competence protein ComEC/Rec2 id=2154552 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
DNA internalization-like competence protein ComEC/Rec2
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_18
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

15432..16295
DNA (864bp) protein (288aa)
metallo beta-lactamase family protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803006 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
metallo beta-lactamase family protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_19
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

16339..16920
DNA (582bp) protein (194aa)
Superoxide dismutase (EC:1.15.1.1) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=5050389 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Superoxide dismutase (EC:1.15.1.1)
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_20
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

16973..18037
DNA (1065bp) protein (355aa)
hypothetical protein
source missing description 57..237 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
source missing description 57..237 id=725610 bin=RAAC2_WWE3 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=RAAC2_WWE3 organism_group=WWE3
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_21
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

18046..18555
DNA (510bp) protein (170aa)
id=3224706 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
id=3224706 bin=GWC1_CPR2_39_9 species=ACD3 genus=ACD3 taxon_order=ACD3 taxon_class=ACD3 phylum=BD1-5 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_22
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

19002..19322
DNA (321bp) protein (107aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_23
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(19484..19879)
DNA (396bp) protein (132aa)
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_24
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(20204..21100)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B3619D
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_25
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(21197..22726)
DNA (1530bp) protein (510aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
leucyl aminopeptidase (EC:3.4.11.1)
hypothetical protein id=5801582 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_26
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

23084..23713
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E9K0_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_27
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


23780..24196
DNA (417bp) protein (139aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
30S ribosomal protein S12 id=3021593 bin=GWF1_Tenericute_35_14 species=Acholeplasma laidlawii genus=Acholeplasma taxon_order=Acholeplasmatales taxon_class=Mollicutes phylum=Tenericutes tax=GWF1_Tenericute_35_14 organism_group=Tenericutes
rpsL; 30S ribosomal protein S12
RIFCSPHIGHO2_01_FULL_OD1_50_25_rifcsphigho2_01_scaffold_4676_28
R_RIF_OD1_13_50_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists


24425..24862
DNA (438bp) protein (146aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_13_50_25_curated
30S ribosomal protein S7 id=3736611 bin=GWC2_OD1_43_27 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
30S ribosomal protein S7
Displaying 28 items

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