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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 51-100 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_11532 CNBR_UNK_676
Species: Novosphingobium sp. MD-1 (50%)
4 5516 bp 58.63 9.57 99.64
cn_combo_scaffold_10905 CNBR_UNK_339a
Species: R_Betaproteobacteria_61_14 (50%)
4 5814 bp 62.30 7.81 95.15
cn_combo_scaffold_11673 CNBR_UNK_681
Phylum: Proteobacteria (50%)
4 5450 bp 51.10 188.24 72.50
cn_combo_scaffold_11399 CNBR_UNK_342a
Order: Burkholderiales (50%)
4 5584 bp 61.37 13.57 90.80
cn_combo_scaffold_11788 CNBR_UNK_686
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 5406 bp 65.59 23.03 92.23
cn_combo_scaffold_12815 CNBR_UNK_266
Order: Sphingomonadales (50%)
4 5011 bp 64.50 10.42 81.00
cn_combo_scaffold_12794 CNBR_UNK_358a
Genus: Bordetella (80%)
5 5018 bp 66.80 9.13 99.54
cn_combo_scaffold_12799 CNBR_UNK_359a
Order: Rhodospirillales (60%)
5 5016 bp 65.55 13.82 92.70
cn_combo_scaffold_8592 CNBR_UNK_48
Order: Burkholderiales (60%)
5 7287 bp 54.77 17.96 81.43
cn_combo_scaffold_10874 CNBR_UNK_202
Domain: Bacteria (80%)
5 5830 bp 64.91 8.66 83.77
cn_combo_scaffold_10899 CNBR_UNK_175 5 6424 bp 57.78 111.21 57.58
cn_combo_scaffold_6327 CNBR_UNK_491
Domain: Bacteria (100%)
5 9546 bp 60.94 122.71 93.81
cn_combo_scaffold_12692 CNBR_UNK_723
Phylum: Proteobacteria (60%)
5 5052 bp 57.96 8.53 96.14
cn_combo_scaffold_11127 CNBR_UNK_214
Domain: Bacteria (60%)
5 5710 bp 58.93 7.65 85.80
cn_combo_scaffold_9214 CNBR_UNK_78
Class: Betaproteobacteria (60%)
5 6828 bp 57.94 7.63 94.86
cn_combo_scaffold_11265 CNBR_UNK_220
Species: Devosia riboflavina (60%)
5 5643 bp 66.47 11.16 91.97
cn_combo_scaffold_11551 CNBR_UNK_228
Genus: Mesorhizobium (80%)
5 5508 bp 68.28 12.24 93.63
cn_combo_scaffold_10531 CNBR_UNK_647
Class: Betaproteobacteria (60%)
5 6019 bp 54.64 178.95 81.54
cn_combo_scaffold_9473 CNBR_UNK_167 5 6638 bp 58.50 16.69 55.72
cn_combo_scaffold_11259 CNBR_UNK_63
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 5647 bp 57.80 10.11 95.89
cn_combo_scaffold_15221 CNBR_UNK_65
Species: Methyloversatilis universalis (60%)
5 5363 bp 64.78 34.05 79.21
cn_combo_scaffold_11938 CNBR_UNK_238
Class: Alphaproteobacteria (80%)
5 5341 bp 67.14 11.25 86.44
cn_combo_scaffold_17070 CNBR_UNK_62
Genus: Candidatus Accumulibacter (60%)
5 5749 bp 62.05 36.55 70.97
cn_combo_scaffold_9602 CNBR_UNK_169
Order: Burkholderiales (60%)
5 6554 bp 57.40 84.86 87.47
cn_combo_scaffold_10735 CNBR_UNK_654
Order: Rhizobiales (60%)
5 5907 bp 65.16 11.88 87.25
cn_combo_scaffold_9575 CNBR_UNK_320
Class: Alphaproteobacteria (60%)
5 6572 bp 64.39 15.26 90.16
cn_combo_scaffold_10773 CNBR_UNK_655
Phylum: Proteobacteria (60%)
5 5888 bp 58.56 267.66 75.97
cn_combo_scaffold_10591 CNBR_UNK_330
Order: Rhodospirillales (60%)
5 5981 bp 67.60 13.94 97.56
cn_combo_scaffold_10648 CNBR_UNK_332
Species: Mesorhizobium sp. LNHC220B00 (60%)
5 5951 bp 66.75 12.40 92.76
cn_combo_scaffold_10694 CNBR_UNK_334
Order: Burkholderiales (60%)
5 5924 bp 63.71 10.45 99.51
cn_combo_scaffold_10730 CNBR_UNK_336
Order: Burkholderiales (60%)
5 5910 bp 71.02 14.92 96.95
cn_combo_scaffold_11486 CNBR_UNK_674
Phylum: Proteobacteria (80%)
5 5539 bp 54.18 16.41 85.41
cn_combo_scaffold_10196 CNBR_UNK_184 5 6218 bp 58.76 12.75 79.90
cn_combo_scaffold_11632 CNBR_UNK_678
Order: Rhizobiales (80%)
5 5474 bp 70.64 11.13 95.36
cn_combo_scaffold_12534 CNBR_UNK_254
Order: Rhizobiales (60%)
5 5109 bp 67.96 11.04 87.79
cn_combo_scaffold_12558 CNBR_UNK_255 5 5100 bp 58.39 8.43 65.00
cn_combo_scaffold_5772 CNBR_UNK_456
Class: Alphaproteobacteria (60%)
5 11372 bp 55.94 286.63 92.68
cn_combo_scaffold_12017 CNBR_UNK_349a
Order: Sphingomonadales (80%)
5 5304 bp 64.22 17.44 86.37
cn_combo_scaffold_10500 CNBR_UNK_194
Phylum: Proteobacteria (80%)
5 6034 bp 59.31 27.91 98.54
cn_combo_scaffold_12739 CNBR_UNK_263
Order: Rhizobiales (60%)
5 5039 bp 58.44 9.39 74.30
cn_combo_scaffold_10551 CNBR_UNK_196
Domain: Bacteria (60%)
5 6005 bp 61.45 9.54 92.22
cn_combo_scaffold_12797 CNBR_UNK_264
Genus: Flavobacterium (60%)
5 5017 bp 37.15 8.11 90.53
cn_combo_scaffold_12208 CNBR_UNK_705
Domain: Bacteria (100%)
5 5231 bp 54.27 8.07 99.27
cn_combo_scaffold_8796 CNBR_UNK_576
Species: Pseudoxanthomonas suwonensis (80%)
5 7148 bp 68.48 51.23 96.03
cn_combo_scaffold_8818 CNBR_UNK_578
Species: Pseudoxanthomonas suwonensis (80%)
5 7134 bp 67.42 48.32 96.13
cn_combo_scaffold_8904 CNBR_UNK_582
Class: Betaproteobacteria (50%)
6 7062 bp 51.29 111.89 84.92
cn_combo_scaffold_12291 CNBR_UNK_715
Class: Betaproteobacteria (100%)
6 5199 bp 57.20 26.83 78.59
cn_combo_scaffold_7991 CNBR_UNK_140
Genus: Flavobacterium (50%)
6 7769 bp 39.85 16.94 90.90
cn_combo_scaffold_11545 EUK65_643 6 6744 bp 34.27 92.93 98.89
cn_combo_scaffold_12385 CNBR_UNK_716
Phylum: Proteobacteria (66.67%)
6 5166 bp 65.64 15.21 92.22
Displaying items 51-100 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.