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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 1-50 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_8954 CNBR_UNK_583
Phylum: Proteobacteria (100%)
8 7031 bp 69.61 35.51 100.74
cn_combo_scaffold_11919 CNBR_UNK_695
Domain: Bacteria (55.56%)
9 5347 bp 64.93 10.42 100.32
cn_combo_scaffold_7996 CNBR_UNK_76
Species: Hahella chejuensis (50%)
10 7765 bp 62.60 25.41 100.30
cn_combo_scaffold_7318 CNBR_UNK_56
Order: Hydrogenophilales (66.67%)
3 8382 bp 62.19 30.96 100.07
cn_combo_scaffold_4118 CNBR_UNK_404
Class: Alphaproteobacteria (50%)
4 14218 bp 72.61 256.79 100.04
cn_combo_scaffold_4857 CNBR_UNK_436
Species: Pseudomonas fluorescens (50%)
2 12322 bp 72.33 269.19 100.02
cn_combo_scaffold_11539 CNBR_UNK_81
Species: Alcanivorax pacificus (100%)
1 5511 bp 68.01 10.27 100.00
cn_combo_scaffold_44631 CNBR_UNK_698
Class: Gammaproteobacteria (62.5%)
8 5334 bp 67.23 139.75 99.94
cn_combo_scaffold_11584 CNBR_UNK_229
Domain: Bacteria (100%)
6 5495 bp 66.30 10.79 99.80
cn_combo_scaffold_9705 CNBR_UNK_171
Domain: Bacteria (90.91%)
11 6494 bp 57.11 15.74 99.78
cn_combo_scaffold_11532 CNBR_UNK_676
Species: Novosphingobium sp. MD-1 (50%)
4 5516 bp 58.63 9.57 99.64
cn_combo_scaffold_12794 CNBR_UNK_358a
Genus: Bordetella (80%)
5 5018 bp 66.80 9.13 99.54
cn_combo_scaffold_10694 CNBR_UNK_334
Order: Burkholderiales (60%)
5 5924 bp 63.71 10.45 99.51
cn_combo_scaffold_9834 CNBR_UNK_619
Genus: Thiobacillus (50%)
6 6425 bp 66.88 31.67 99.46
cn_combo_scaffold_9411 CNBR_UNK_58
Species: Thauera sp. MZ1T (77.78%)
9 6673 bp 62.63 64.02 99.45
cn_combo_scaffold_11147 CNBR_UNK_215
Species: marine sediment metagenome (75%)
4 5699 bp 71.89 8.88 99.39
cn_combo_scaffold_12208 CNBR_UNK_705
Domain: Bacteria (100%)
5 5231 bp 54.27 8.07 99.27
cn_combo_scaffold_7432 CNBR_UNK_2
Class: Betaproteobacteria (63.64%)
11 10618 bp 61.10 452.59 99.23
cn_combo_scaffold_11842 CNBR_UNK_71
Genus: Candidatus Accumulibacter (66.67%)
3 5382 bp 63.21 10.63 99.11
cn_combo_scaffold_9598 CNBR_UNK_79
Species: Nitrococcus mobilis (50%)
4 6555 bp 67.38 10.05 99.08
cn_combo_scaffold_10526 CNBR_UNK_329
Class: Gammaproteobacteria (66.67%)
3 6021 bp 53.25 8.57 99.00
cn_combo_scaffold_3454 CNBR_UNK_380
Class: Gammaproteobacteria (64.71%)
17 16651 bp 60.61 42.99 98.99
cn_combo_scaffold_11545 EUK65_643 6 6744 bp 34.27 92.93 98.89
cn_combo_scaffold_10052 CNBR_UNK_325
Genus: Delftia (50%)
4 6291 bp 66.29 10.21 98.76
cn_combo_scaffold_4312 CNBR_UNK_407
Phylum: Proteobacteria (66.67%)
15 13561 bp 55.65 267.22 98.73
cn_combo_scaffold_8714 CNBR_UNK_572
Phylum: Proteobacteria (85.71%)
7 7201 bp 60.91 8.17 98.65
cn_combo_scaffold_10500 CNBR_UNK_194
Phylum: Proteobacteria (80%)
5 6034 bp 59.31 27.91 98.54
cn_combo_scaffold_13105 CNBR_UNK_66
Species: Azospira oryzae (66.67%)
3 5229 bp 66.51 136.85 98.51
cn_combo_scaffold_8596 CNBR_UNK_569
Phylum: Proteobacteria (85.71%)
7 7286 bp 65.99 12.56 98.49
cn_combo_scaffold_8237 CNBR_UNK_556
Phylum: Proteobacteria (50%)
6 7565 bp 60.52 93.65 98.47
cn_combo_scaffold_6622 CNBR_UNK_507
Species: R_Alphaproteobacteria_66_14 (88.89%)
9 9159 bp 64.50 14.54 98.43
cn_combo_scaffold_11506 CNBR_UNK_343a
Species: R_Burkholderiales_69_20 (50%)
6 5526 bp 69.24 12.69 98.37
cn_combo_scaffold_5737 CNBR_UNK_55
Class: Betaproteobacteria (60%)
10 10412 bp 57.16 18.08 98.31
cn_combo_scaffold_8093 CNBR_UNK_550
Species: R_Alphaproteobacteria_66_14 (62.5%)
8 7685 bp 66.83 14.21 98.18
cn_combo_scaffold_7176 CNBR_UNK_466
Genus: Devosia (50%)
10 10764 bp 67.75 13.40 98.16
cn_combo_scaffold_9893 CNBR_UNK_516
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 8722 bp 66.51 15.35 98.13
cn_combo_scaffold_9804 CNBR_UNK_617
Class: Alphaproteobacteria (77.78%)
9 6437 bp 59.92 8.92 98.10
cn_combo_scaffold_4478 CNBR_UNK_419
Phylum: Proteobacteria (71.43%)
14 13114 bp 55.91 23.39 98.09
cn_combo_scaffold_7450 CNBR_UNK_75
Species: Pseudomonas balearica (57.14%)
7 8261 bp 61.03 9.38 98.09
cn_combo_scaffold_12321 CNBR_UNK_82
Species: marine gamma proteobacterium HTCC2148 (50%)
4 5189 bp 68.84 8.88 98.05
cn_combo_scaffold_9860 CNBR_UNK_176
Class: Alphaproteobacteria (66.67%)
6 6405 bp 66.07 13.11 98.03
cn_combo_scaffold_2528 CNBR_UNK_353b
Species: R_Alphaproteobacteria_66_14 (81.82%)
22 21930 bp 64.12 14.85 98.02
cn_combo_scaffold_4963 CNBR_UNK_446
Species: R_Alphaproteobacteria_66_14 (73.33%)
15 11833 bp 66.84 14.10 98.01
cn_combo_scaffold_9620 CNBR_UNK_611
Phylum: Proteobacteria (83.33%)
6 6539 bp 66.71 12.46 98.00
cn_combo_scaffold_3980 CNBR_UNK_398
Order: Burkholderiales (78.57%)
14 14688 bp 65.49 65.48 97.90
cn_combo_scaffold_8044 CNBR_UNK_547
Species: Rhodopseudomonas palustris (50%)
6 7736 bp 63.79 103.37 97.84
cn_combo_scaffold_4756 CNBR_UNK_433
Class: Alphaproteobacteria (50%)
16 12366 bp 62.17 17.35 97.84
cn_combo_scaffold_12671 CNBR_UNK_722
Class: Alphaproteobacteria (50%)
6 5062 bp 56.06 12.60 97.79
cn_combo_scaffold_14469 CNBR_UNK_80
Species: Thioalkalivibrio sulfidiphilus (66.67%)
6 5536 bp 63.84 11.16 97.71
cn_combo_scaffold_11316 CNBR_UNK_671
Species: Devosia epidermidihirudinis (50%)
6 5618 bp 65.25 12.21 97.67
Displaying items 1-50 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.