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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 201-250 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_6417 CNBR_UNK_399
Phylum: Proteobacteria (60%)
10 14459 bp 58.57 256.32 85.38
cn_combo_scaffold_12272 CNBR_UNK_50
Domain: Bacteria (75%)
8 5210 bp 59.16 6.78 85.39
cn_combo_scaffold_11486 CNBR_UNK_674
Phylum: Proteobacteria (80%)
5 5539 bp 54.18 16.41 85.41
cn_combo_scaffold_9156 CNBR_UNK_160 11 6873 bp 60.53 14.11 85.42
cn_combo_scaffold_3765 CNBR_UNK_93
Domain: Bacteria (50%)
16 15358 bp 63.71 35.05 85.56
cn_combo_scaffold_7964 CNBR_UNK_118
Domain: Bacteria (57.14%)
14 9271 bp 61.86 66.23 85.59
cn_combo_scaffold_4448 CNBR_UNK_97 4 13198 bp 58.93 22.76 85.60
cn_combo_scaffold_7932 CNBR_UNK_138
Order: Xanthomonadales (50%)
10 7811 bp 62.35 10.29 85.61
cn_combo_scaffold_9259 CNBR_UNK_600
Order: Rhizobiales (62.5%)
8 6784 bp 69.12 11.63 85.79
cn_combo_scaffold_11127 CNBR_UNK_214
Domain: Bacteria (60%)
5 5710 bp 58.93 7.65 85.80
cn_combo_scaffold_7626 CNBR_UNK_131
Domain: Bacteria (62.5%)
8 8090 bp 65.32 47.00 85.81
cn_combo_scaffold_14815 CNBR_UNK_535
Class: Alphaproteobacteria (50%)
8 8079 bp 65.28 10.88 85.82
cn_combo_scaffold_10743 CNBR_UNK_200 13 5902 bp 59.49 19.84 85.85
cn_combo_scaffold_10028 CNBR_UNK_626
Class: Alphaproteobacteria (57.14%)
7 6299 bp 62.80 8.70 85.87
cn_combo_scaffold_13141
Species: Nitrosomonas europaea (83.33%)
6 4890 bp 52.11 12.76 85.89
cn_combo_scaffold_12610 CNBR_UNK_719
Class: Betaproteobacteria (57.14%)
7 5082 bp 56.32 39.32 85.95
cn_combo_scaffold_6575 CNBR_UNK_504
Class: Alphaproteobacteria (62.5%)
8 9227 bp 60.00 8.03 86.03
cn_combo_scaffold_3925 CNBR_UNK_349b
Class: Gammaproteobacteria (65%)
20 22671 bp 61.16 19.21 86.15
cn_combo_scaffold_4372 CNBR_UNK_410
Phylum: Proteobacteria (56.25%)
16 13383 bp 64.06 12.81 86.24
cn_combo_scaffold_12687 CNBR_UNK_260
Species: Chitinophaga pinensis (100%)
1 5054 bp 59.68 24.42 86.25
cn_combo_scaffold_6373 CNBR_UNK_493
Domain: Bacteria (88.89%)
9 9489 bp 62.43 10.49 86.31
cn_combo_scaffold_11308 CNBR_UNK_222
Class: Alphaproteobacteria (50%)
6 5623 bp 64.11 11.01 86.32
cn_combo_scaffold_12017 CNBR_UNK_349a
Order: Sphingomonadales (80%)
5 5304 bp 64.22 17.44 86.37
cn_combo_scaffold_9345 CNBR_UNK_602
Order: Burkholderiales (62.5%)
8 6713 bp 60.55 101.49 86.38
cn_combo_scaffold_11401 CNBR_UNK_673
Order: Burkholderiales (58.33%)
12 5584 bp 65.01 10.37 86.39
cn_combo_scaffold_4646 CNBR_UNK_99
Phylum: Proteobacteria (50%)
18 12670 bp 61.79 17.06 86.40
cn_combo_scaffold_11938 CNBR_UNK_238
Class: Alphaproteobacteria (80%)
5 5341 bp 67.14 11.25 86.44
cn_combo_scaffold_10275 CNBR_UNK_188
Order: Rhizobiales (50%)
10 6165 bp 60.42 8.65 86.47
cn_combo_scaffold_11660 CNBR_UNK_679
Genus: Devosia (50%)
6 5457 bp 64.82 11.84 86.48
cn_combo_scaffold_5017 CNBR_UNK_105
Domain: Bacteria (69.23%)
13 11730 bp 53.71 15.71 86.50
cn_combo_scaffold_3508 CNBR_UNK_89 17 17321 bp 50.68 21.38 86.53
cn_combo_scaffold_3921 CNBR_UNK_395
Order: Rhodocyclales (53.85%)
13 15052 bp 65.61 91.10 86.56
cn_combo_scaffold_8070 CNBR_UNK_8
Order: Burkholderiales (100%)
21 19304 bp 66.48 83.78 86.61
cn_combo_scaffold_8549 CNBR_UNK_149
Phylum: Proteobacteria (50%)
14 7315 bp 60.55 35.26 86.62
cn_combo_scaffold_5324 CNBR_UNK_460
Class: Gammaproteobacteria (50%)
10 11110 bp 64.22 13.21 86.65
cn_combo_scaffold_4173 CNBR_UNK_15
Genus: Pseudomonas (71.43%)
21 23808 bp 59.02 14.12 86.67
cn_combo_scaffold_10652 CNBR_UNK_650
Genus: Alicycliphilus (62.5%)
8 5948 bp 65.53 22.01 86.70
cn_combo_scaffold_6980 CNBR_UNK_420
Class: Alphaproteobacteria (93.33%)
15 13104 bp 63.29 79.62 86.74
cn_combo_scaffold_10185 CNBR_UNK_182
Phylum: Proteobacteria (60%)
10 6223 bp 60.44 83.38 86.77
cn_combo_scaffold_6099 CNBR_UNK_114
Domain: Bacteria (60%)
10 9877 bp 64.67 13.07 86.84
cn_combo_scaffold_10698 CNBR_UNK_335
Phylum: Proteobacteria (85.71%)
7 5922 bp 58.14 11.06 86.98
cn_combo_scaffold_10897 CNBR_UNK_203
Domain: Bacteria (85.71%)
7 5817 bp 61.90 7.20 87.06
cn_combo_scaffold_3477 CNBR_UNK_382
Order: Rhizobiales (64.71%)
17 16530 bp 59.98 37.17 87.15
cn_combo_scaffold_12253 CNBR_UNK_709
Phylum: Proteobacteria (66.67%)
6 5214 bp 59.49 26.77 87.17
cn_combo_scaffold_9102 CNBR_UNK_318
Order: Burkholderiales (100%)
9 6914 bp 63.73 11.34 87.21
cn_combo_scaffold_11105 CNBR_UNK_212
Class: Alphaproteobacteria (50%)
6 5726 bp 66.22 10.83 87.23
cn_combo_scaffold_10735 CNBR_UNK_654
Order: Rhizobiales (60%)
5 5907 bp 65.16 11.88 87.25
cn_combo_scaffold_2271 CNBR_UNK_344b
Phylum: Proteobacteria (63.64%)
22 24040 bp 62.10 326.89 87.25
cn_combo_scaffold_6932 CNBR_UNK_121
Domain: Bacteria (58.33%)
12 8809 bp 59.42 11.49 87.29
cn_combo_scaffold_10561 CNBR_UNK_585
Class: Alphaproteobacteria (50%)
6 7008 bp 64.87 9.66 87.29
Displaying items 201-250 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.