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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 201-250 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4585 CNBR_UNK_1
Domain: Bacteria (83.33%)
12 12831 bp 61.30 32.63 89.55
cn_combo_scaffold_11815 CNBR_UNK_235 12 5395 bp 61.09 20.54 76.24
cn_combo_scaffold_4633 CNBR_UNK_390
Order: Rhodocyclales (50%)
12 15681 bp 54.61 41.50 92.83
cn_combo_scaffold_4758 CNBR_UNK_434
Species: R_Alphaproteobacteria_66_14 (50%)
12 12359 bp 64.36 13.12 96.10
cn_combo_scaffold_4855 CNBR_UNK_440
Species: R_Alphaproteobacteria_66_14 (66.67%)
12 12125 bp 64.49 13.37 96.12
cn_combo_scaffold_7790 CNBR_UNK_426
Class: Gammaproteobacteria (58.33%)
12 12509 bp 65.58 342.70 96.43
cn_combo_scaffold_5018 CNBR_UNK_447
Class: Alphaproteobacteria (58.33%)
12 11728 bp 62.81 18.04 97.59
cn_combo_scaffold_6932 CNBR_UNK_121
Domain: Bacteria (58.33%)
12 8809 bp 59.42 11.49 87.29
cn_combo_scaffold_5070 CNBR_UNK_451
Order: Rhizobiales (50%)
12 11617 bp 63.88 16.07 96.94
cn_combo_scaffold_11401 CNBR_UNK_673
Order: Burkholderiales (58.33%)
12 5584 bp 65.01 10.37 86.39
cn_combo_scaffold_5410 CNBR_UNK_463
Order: Burkholderiales (50%)
12 10961 bp 67.12 142.24 95.06
cn_combo_scaffold_5515 CNBR_UNK_465
Class: Alphaproteobacteria (75%)
12 10794 bp 66.93 11.98 85.33
cn_combo_scaffold_5655 CNBR_UNK_469
Species: R_Alphaproteobacteria_66_14 (50%)
12 10551 bp 65.87 14.49 94.23
cn_combo_scaffold_5898 CNBR_UNK_475
Class: Betaproteobacteria (75%)
12 10149 bp 60.42 40.02 88.89
cn_combo_scaffold_6334 CNBR_UNK_492
Species: R_Alphaproteobacteria_66_14 (81.82%)
11 9534 bp 65.53 17.19 97.45
cn_combo_scaffold_6400 CNBR_UNK_480
Class: Alphaproteobacteria (54.55%)
11 9940 bp 57.38 13.03 70.93
cn_combo_scaffold_11087 CNBR_UNK_211 11 5734 bp 63.88 9.47 95.22
cn_combo_scaffold_12734 CNBR_UNK_584
Phylum: Proteobacteria (54.55%)
11 7011 bp 65.74 47.57 87.63
cn_combo_scaffold_5719 CNBR_UNK_73
Class: Gammaproteobacteria (54.55%)
11 10729 bp 58.55 163.31 92.89
cn_combo_scaffold_14997 CNBR_UNK_563
Class: Betaproteobacteria (72.73%)
11 7353 bp 58.77 191.38 89.19
cn_combo_scaffold_3953 CNBR_UNK_396
Order: Rhodospirillales (54.55%)
11 14766 bp 66.30 15.19 94.19
cn_combo_scaffold_23189 CNBR_UNK_541
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (54.55%)
11 7801 bp 63.12 210.87 90.04
cn_combo_scaffold_10051 CNBR_UNK_627
Class: Alphaproteobacteria (63.64%)
11 6291 bp 68.30 13.34 83.74
cn_combo_scaffold_32994 CNBR_UNK_699
Class: Betaproteobacteria (54.55%)
11 5315 bp 55.03 271.93 73.49
cn_combo_scaffold_8995 CNBR_UNK_106
Species: GWE1_Thiobacillus_62_9_curated (63.64%)
11 11362 bp 66.16 28.52 95.13
cn_combo_scaffold_10126 CNBR_UNK_506
Class: Alphaproteobacteria (63.64%)
11 9164 bp 61.85 68.90 90.98
cn_combo_scaffold_9156 CNBR_UNK_160 11 6873 bp 60.53 14.11 85.42
cn_combo_scaffold_4466 CNBR_UNK_418
Domain: Bacteria (90.91%)
11 13148 bp 66.37 36.12 82.83
cn_combo_scaffold_9398 CNBR_UNK_164 11 6682 bp 66.73 10.81 94.51
cn_combo_scaffold_7662 CNBR_UNK_536
Phylum: Proteobacteria (54.55%)
11 8050 bp 63.20 10.36 94.51
cn_combo_scaffold_9705 CNBR_UNK_171
Domain: Bacteria (90.91%)
11 6494 bp 57.11 15.74 99.78
cn_combo_scaffold_4779 CNBR_UNK_437
Class: Gammaproteobacteria (54.55%)
11 12320 bp 65.57 15.33 88.66
cn_combo_scaffold_9736 CNBR_UNK_173 11 6477 bp 64.97 12.18 87.86
cn_combo_scaffold_7432 CNBR_UNK_2
Class: Betaproteobacteria (63.64%)
11 10618 bp 61.10 452.59 99.23
cn_combo_scaffold_7800 CNBR_UNK_539
Class: Gammaproteobacteria (63.64%)
11 7929 bp 64.71 101.50 94.40
cn_combo_scaffold_6875 CNBR_UNK_120
Domain: Bacteria (54.55%)
11 8865 bp 58.52 11.04 71.71
cn_combo_scaffold_7972 CNBR_UNK_544
Phylum: Proteobacteria (54.55%)
11 7782 bp 54.24 10.96 90.44
cn_combo_scaffold_9900 CNBR_UNK_177 11 6379 bp 62.55 9.89 72.05
cn_combo_scaffold_5032 CNBR_UNK_449
Order: Burkholderiales (54.55%)
11 11690 bp 60.92 10.33 89.82
cn_combo_scaffold_8144 CNBR_UNK_552
Genus: Pseudomonas (63.64%)
11 7639 bp 63.74 62.72 83.53
cn_combo_scaffold_5173 CNBR_UNK_455
Phylum: Proteobacteria (72.73%)
11 11399 bp 63.81 11.07 93.06
cn_combo_scaffold_5202 CNBR_UNK_457
Species: R_Alphaproteobacteria_66_14 (81.82%)
11 11327 bp 64.79 17.11 94.45
cn_combo_scaffold_7232 CNBR_UNK_126
Phylum: Proteobacteria (72.73%)
11 8470 bp 52.92 12.73 84.72
cn_combo_scaffold_7391 CNBR_UNK_127 11 8309 bp 56.72 8.18 81.60
cn_combo_scaffold_12822 CNBR_UNK_268
Domain: Bacteria (54.55%)
11 5007 bp 56.28 11.92 71.90
cn_combo_scaffold_6078 CNBR_UNK_481
Class: Alphaproteobacteria (72.73%)
11 9898 bp 65.87 12.91 89.44
cn_combo_scaffold_8902 CNBR_UNK_581
Order: Burkholderiales (70%)
10 7064 bp 58.76 84.67 81.37
cn_combo_scaffold_7932 CNBR_UNK_138
Order: Xanthomonadales (50%)
10 7811 bp 62.35 10.29 85.61
cn_combo_scaffold_13696 CNBR_UNK_207 10 5789 bp 68.96 8.84 96.39
cn_combo_scaffold_6149 CNBR_UNK_486
Species: Parvibaculum lavamentivorans (90%)
10 9792 bp 61.74 16.92 94.76
Displaying items 201-250 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.