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CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 201-250 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_10481 CNBR_UNK_645
Genus: Devosia (50%)
4 6042 bp 66.19 12.71 81.03
cn_combo_scaffold_10465 CNBR_UNK_644
Class: Alphaproteobacteria (58.33%)
12 6052 bp 66.11 11.14 96.32
cn_combo_scaffold_19268 CNBR_UNK_192
Phylum: Proteobacteria (50%)
8 6055 bp 58.20 10.72 78.53
cn_combo_scaffold_12195 CNBR_UNK_643
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 6062 bp 65.92 12.67 95.41
cn_combo_scaffold_10436 CNBR_UNK_60
Species: Candidatus Accumulibacter phosphatis (50%)
4 6070 bp 56.52 132.16 89.31
cn_combo_scaffold_10394 CNBR_UNK_191 6 6089 bp 66.28 12.56 93.02
cn_combo_scaffold_11598 CNBR_UNK_190
Phylum: Proteobacteria (50%)
8 6090 bp 65.25 1564.76 69.51
cn_combo_scaffold_10389 CNBR_UNK_189 7 6092 bp 56.91 7.01 89.33
cn_combo_scaffold_10370 CNBR_UNK_642
Domain: Bacteria (71.43%)
7 6104 bp 56.34 9.03 93.82
cn_combo_scaffold_10365 CNBR_UNK_641
Phylum: Proteobacteria (70%)
10 6107 bp 59.33 35.99 85.23
cn_combo_scaffold_10316 CNBR_UNK_640
Phylum: Proteobacteria (77.78%)
9 6140 bp 66.48 12.33 91.76
cn_combo_scaffold_16117 CNBR_UNK_328
Order: Burkholderiales (50%)
6 6141 bp 66.78 13.34 97.66
cn_combo_scaffold_10984 CNBR_UNK_639
Class: Gammaproteobacteria (50%)
8 6148 bp 65.76 40.83 94.52
cn_combo_scaffold_10275 CNBR_UNK_188
Order: Rhizobiales (50%)
10 6165 bp 60.42 8.65 86.47
cn_combo_scaffold_10262 CNBR_UNK_187 15 6173 bp 59.78 11.55 92.58
cn_combo_scaffold_10255 CNBR_UNK_638
Species: Sphingopyxis sp. LC363 (100%)
4 6177 bp 65.05 9.08 96.45
cn_combo_scaffold_10239 CNBR_UNK_327
Order: Burkholderiales (66.67%)
6 6187 bp 74.62 12.62 94.89
cn_combo_scaffold_10227 CNBR_UNK_637
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 6194 bp 67.03 14.76 96.19
cn_combo_scaffold_10216 CNBR_UNK_636
Order: Rhizobiales (50%)
8 6203 bp 66.24 12.14 84.25
cn_combo_scaffold_10214 CNBR_UNK_635
Order: Hydrogenophilales (66.67%)
9 6204 bp 64.78 40.41 89.02
cn_combo_scaffold_10209 CNBR_UNK_185
Domain: Bacteria (62.5%)
8 6208 bp 62.95 10.26 77.37
cn_combo_scaffold_10196 CNBR_UNK_184 5 6218 bp 58.76 12.75 79.90
cn_combo_scaffold_10186 CNBR_UNK_183 13 6223 bp 62.56 9.51 81.04
cn_combo_scaffold_10185 CNBR_UNK_182
Phylum: Proteobacteria (60%)
10 6223 bp 60.44 83.38 86.77
cn_combo_scaffold_10169 CNBR_UNK_634
Order: Xanthomonadales (71.43%)
7 6229 bp 63.86 15.33 94.25
cn_combo_scaffold_10132 CNBR_UNK_181 13 6245 bp 66.12 11.88 85.27
cn_combo_scaffold_10127 CNBR_UNK_633
Class: Alphaproteobacteria (50%)
8 6250 bp 65.09 16.26 92.35
cn_combo_scaffold_10123 CNBR_UNK_632
Class: Alphaproteobacteria (57.14%)
7 6253 bp 63.79 12.62 94.80
cn_combo_scaffold_10119 CNBR_UNK_631
Species: GWA2_Gallionellales_60_142_curated (62.5%)
8 6258 bp 62.78 23.94 81.35
cn_combo_scaffold_10112 CNBR_UNK_630
Order: Burkholderiales (55.56%)
9 6262 bp 60.12 8.37 92.56
cn_combo_scaffold_18295 CNBR_UNK_629
Order: Burkholderiales (50%)
10 6267 bp 62.01 163.92 91.48
cn_combo_scaffold_16133 CNBR_UNK_326
Order: Burkholderiales (100%)
7 6274 bp 64.17 11.38 93.19
cn_combo_scaffold_26930 CNBR_UNK_628
Genus: Devosia (58.33%)
12 6276 bp 58.48 44.44 81.69
cn_combo_scaffold_14194 CNBR_UNK_179
Domain: Bacteria (71.43%)
7 6286 bp 64.38 11.22 92.30
cn_combo_scaffold_10051 CNBR_UNK_627
Class: Alphaproteobacteria (63.64%)
11 6291 bp 68.30 13.34 83.74
cn_combo_scaffold_10052 CNBR_UNK_325
Genus: Delftia (50%)
4 6291 bp 66.29 10.21 98.76
cn_combo_scaffold_10028 CNBR_UNK_626
Class: Alphaproteobacteria (57.14%)
7 6299 bp 62.80 8.70 85.87
cn_combo_scaffold_10013 CNBR_UNK_625
Genus: Mesorhizobium (50%)
4 6308 bp 61.02 9.62 87.56
cn_combo_scaffold_9991 CNBR_UNK_624
Genus: Devosia (50%)
8 6321 bp 65.56 12.17 92.45
cn_combo_scaffold_9983 CNBR_UNK_70
Domain: Bacteria (66.67%)
6 6326 bp 36.47 14.04 71.75
cn_combo_scaffold_9982 CNBR_UNK_178 15 6326 bp 66.04 9.77 92.14
cn_combo_scaffold_9933 CNBR_UNK_623
Order: Hydrogenophilales (62.5%)
8 6355 bp 64.97 40.06 88.94
cn_combo_scaffold_9900 CNBR_UNK_177 11 6379 bp 62.55 9.89 72.05
cn_combo_scaffold_10776 CNBR_UNK_43 20 6383 bp 63.14 360.85 72.05
cn_combo_scaffold_9892 CNBR_UNK_59
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 6384 bp 58.51 40.40 89.80
cn_combo_scaffold_10510 CNBR_UNK_622
Species: Sphingobium baderi (87.5%)
8 6387 bp 63.86 8.96 97.18
cn_combo_scaffold_9877 CNBR_UNK_621
Order: Chromatiales (50%)
4 6393 bp 63.21 111.67 95.50
cn_combo_scaffold_9860 CNBR_UNK_176
Class: Alphaproteobacteria (66.67%)
6 6405 bp 66.07 13.11 98.03
cn_combo_scaffold_9840 CNBR_UNK_620
Species: R_Alphaproteobacteria_66_14 (83.33%)
6 6412 bp 62.59 16.58 92.92
cn_combo_scaffold_9837 CNBR_UNK_323
Order: Rhizobiales (50%)
8 6421 bp 60.72 11.81 83.91
Displaying items 201-250 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.