ggKbase home page
Advanced Search
Search Help

CN-SCN_Unknown

CN_SCN_UNK
In projects: CN-SCN

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 53.61 Longest contig: 51.82 Kbp Bin length: 6.52 Mbp GC content: 62.39 %
Contigs count: 692 Features count: 7090 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 13 / 55 MC: 2 BSCG 15 / 51 MC: 2 ASCG 5 / 38
Displaying items 401-450 of 693 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_7650 CNBR_UNK_133 9 8062 bp 44.19 10.34 79.93
cn_combo_scaffold_8808 CNBR_UNK_132
Domain: Bacteria (57.14%)
7 8078 bp 64.14 12.22 69.34
cn_combo_scaffold_14815 CNBR_UNK_535
Class: Alphaproteobacteria (50%)
8 8079 bp 65.28 10.88 85.82
cn_combo_scaffold_7626 CNBR_UNK_131
Domain: Bacteria (62.5%)
8 8090 bp 65.32 47.00 85.81
cn_combo_scaffold_7572 CNBR_UNK_130 13 8139 bp 59.26 11.46 82.42
cn_combo_scaffold_7539 CNBR_UNK_534
Order: Burkholderiales (55.56%)
9 8169 bp 58.91 26.40 85.31
cn_combo_scaffold_14615 CNBR_UNK_533
Order: Hydrogenophilales (55.56%)
9 8175 bp 61.11 346.72 83.23
cn_combo_scaffold_7525 CNBR_UNK_532
Order: Hydrogenophilales (50%)
6 8185 bp 58.66 24.91 94.97
cn_combo_scaffold_7523 CNBR_UNK_531
Phylum: Proteobacteria (57.14%)
14 8186 bp 59.87 9.27 80.22
cn_combo_scaffold_7516 CNBR_UNK_129 9 8193 bp 62.58 9.57 91.03
cn_combo_scaffold_7491 CNBR_UNK_530
Class: Betaproteobacteria (55.56%)
9 8218 bp 57.59 10.84 83.34
cn_combo_scaffold_7450 CNBR_UNK_75
Species: Pseudomonas balearica (57.14%)
7 8261 bp 61.03 9.38 98.09
cn_combo_scaffold_7414 CNBR_UNK_128 14 8294 bp 43.39 9.26 96.29
cn_combo_scaffold_7396 CNBR_UNK_529
Order: Hydrogenophilales (50%)
6 8307 bp 59.52 30.75 82.02
cn_combo_scaffold_7391 CNBR_UNK_127 11 8309 bp 56.72 8.18 81.60
cn_combo_scaffold_7390 CNBR_UNK_74
Class: Gammaproteobacteria (85.71%)
7 8312 bp 57.19 33.11 96.80
cn_combo_scaffold_7364 CNBR_UNK_30
Class: Gammaproteobacteria (80%)
10 8335 bp 67.67 14.40 88.51
cn_combo_scaffold_7318 CNBR_UNK_56
Order: Hydrogenophilales (66.67%)
3 8382 bp 62.19 30.96 100.07
cn_combo_scaffold_7293 CNBR_UNK_528
Class: Alphaproteobacteria (71.43%)
7 8402 bp 61.45 9.82 90.01
cn_combo_scaffold_7250 CNBR_UNK_527
Order: Rhizobiales (70%)
10 8451 bp 67.09 10.38 92.05
cn_combo_scaffold_7232 CNBR_UNK_126
Phylum: Proteobacteria (72.73%)
11 8470 bp 52.92 12.73 84.72
cn_combo_scaffold_7216 CNBR_UNK_526
Order: Hydrogenophilales (50%)
8 8489 bp 64.60 31.29 81.60
cn_combo_scaffold_7187 CNBR_UNK_525
Class: Betaproteobacteria (66.67%)
9 8512 bp 60.90 27.66 78.77
cn_combo_scaffold_7163 CNBR_UNK_7
Order: Burkholderiales (80%)
10 8529 bp 62.99 94.40 74.04
cn_combo_scaffold_7583 CNBR_UNK_125 16 8537 bp 59.25 10.12 87.33
cn_combo_scaffold_9503 CNBR_UNK_524
Species: Lysobacter arseniciresistens (60%)
10 8563 bp 65.77 9.84 92.74
cn_combo_scaffold_7113 CNBR_UNK_523
Genus: Devosia (50%)
12 8586 bp 65.37 10.97 89.59
cn_combo_scaffold_9251 CNBR_UNK_522
Order: Hydrogenophilales (53.33%)
15 8629 bp 58.20 30.92 87.33
cn_combo_scaffold_7068 CNBR_UNK_124
Class: Alphaproteobacteria (50%)
6 8652 bp 68.16 11.56 88.42
cn_combo_scaffold_7063 CNBR_UNK_521
Class: Alphaproteobacteria (50%)
8 8656 bp 64.46 15.69 93.33
cn_combo_scaffold_7060 CNBR_UNK_726a
Species: Paracoccus aminophilus (50%)
2 8660 bp 71.92 19.84 94.23
cn_combo_scaffold_7051 CNBR_UNK_520
Class: Betaproteobacteria (53.33%)
15 8665 bp 55.48 108.30 80.01
cn_combo_scaffold_7050 CNBR_UNK_123
Class: Alphaproteobacteria (70%)
10 8666 bp 63.37 10.74 89.66
cn_combo_scaffold_7675 CNBR_UNK_519
Class: Betaproteobacteria (50%)
10 8674 bp 62.44 31.05 95.32
cn_combo_scaffold_7529 CNBR_UNK_296
Class: Betaproteobacteria (83.33%)
6 8683 bp 62.37 11.02 93.35
cn_combo_scaffold_7030 CNBR_UNK_518
Class: Alphaproteobacteria (60%)
10 8699 bp 66.73 11.28 92.39
cn_combo_scaffold_7509 CNBR_UNK_517
Order: Hydrogenophilales (50%)
6 8704 bp 59.08 318.14 94.09
cn_combo_scaffold_9893 CNBR_UNK_516
Species: R_Alphaproteobacteria_66_14 (87.5%)
8 8722 bp 66.51 15.35 98.13
cn_combo_scaffold_6991 CNBR_UNK_515
Phylum: Proteobacteria (50%)
6 8741 bp 63.17 109.15 96.37
cn_combo_scaffold_6977 CNBR_UNK_122
Species: R_Alphaproteobacteria_66_14 (57.14%)
7 8759 bp 64.48 17.44 95.66
cn_combo_scaffold_11606 CNBR_UNK_514
Species: R_Alphaproteobacteria_66_14 (69.23%)
13 8790 bp 65.62 14.44 93.17
cn_combo_scaffold_6939 CNBR_UNK_513
Species: R_Alphaproteobacteria_66_14 (90%)
10 8798 bp 62.98 13.68 90.09
cn_combo_scaffold_10287 CNBR_UNK_512
Species: R_Alphaproteobacteria_66_14 (50%)
8 8803 bp 66.86 15.99 89.83
cn_combo_scaffold_6932 CNBR_UNK_121
Domain: Bacteria (58.33%)
12 8809 bp 59.42 11.49 87.29
cn_combo_scaffold_6875 CNBR_UNK_120
Domain: Bacteria (54.55%)
11 8865 bp 58.52 11.04 71.71
cn_combo_scaffold_6763 CNBR_UNK_294
Class: Betaproteobacteria (75%)
12 9008 bp 63.78 12.54 96.15
cn_combo_scaffold_6731 CNBR_UNK_511
Phylum: Proteobacteria (50%)
10 9042 bp 64.12 14.82 81.98
cn_combo_scaffold_6714 CNBR_UNK_510
Phylum: Proteobacteria (69.23%)
13 9066 bp 59.17 11.21 81.34
cn_combo_scaffold_6656 CNBR_UNK_509
Order: Burkholderiales (62.5%)
8 9131 bp 60.15 24.70 94.79
cn_combo_scaffold_6626 CNBR_UNK_508
Order: Burkholderiales (50%)
6 9156 bp 66.46 14.74 94.72
Displaying items 401-450 of 693 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.