ggKbase home page

RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_1
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(1..825)
-----------------
DNA (825bp)
protein (275aa)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_2
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(822..1214)
-----------------
DNA (393bp)
protein (131aa)
D-alanine--D-alanine ligase n=1 Tax=Exiguobacterium sp. MH3 RepID=U6B9N8_9BACL
D-alanine/D-alanine ligase Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
D-alanine--D-alanine ligase
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_3
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(1767..2648)
-----------------
DNA (882bp)
protein (294aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase; K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
MurB1 id=2269010 bin=GWA2_Elusimicrobia_66_18 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
murB; UDP-N-acetylenolpyruvoylglucosamine reductase
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_4
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

2742..4142
-----------------
DNA (1401bp)
protein (467aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_cu
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] id=14624598 bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_5
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

4120..5406
-----------------
DNA (1287bp)
protein (429aa)
diguanylate cyclase Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Diguanylate cyclase with GAF sensor id=2962112 bin=GWA2_Elusi_like_61_42 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
diguanylate cyclase
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_6
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

5447..6730
-----------------
DNA (1284bp)
protein (428aa)
GGDEF domain protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Diguanylate cyclase with GAF sensor id=1718661 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
GGDEF domain protein
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_7
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

6879..8000
-----------------
DNA (1122bp)
protein (374aa)
cell envelope biogenesis protein OmpA n=1 Tax=Treponema primitia RepID=UPI0002554FC7
OmpA/MotB domain-containing protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
OmpA/MotB domain-containing protein
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_8
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

8001..10037
-----------------
DNA (2037bp)
protein (679aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4Z5_PELCD
hypothetical protein; K07289 AsmA protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
AsmA family protein
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_9
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

10034..11899
-----------------
DNA (1866bp)
protein (622aa)
multi-sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_cu
PAS sensor protein id=3354658 bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
multi-sensor signal transduction histidine kinase
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_10
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

12141..13190
-----------------
DNA (1050bp)
protein (350aa)
RNA polymerase factor sigma-54 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
RNA polymerase factor sigma-54 id=1891810 bin=GWA2_Elusimicrobia_69_24 species=Sporolactobacillus vineae genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_rifcsplowo2_01_scaffold_12712_11
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(13176..13472)
-----------------
DNA (297bp)
protein (99aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase id=3714580 bin=GWA2_OP3_52_12 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Displaying 11 items

View Taxonomy