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RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..130)
DNA (129bp) protein (43aa)
Putative RNA polymerase sigma-E factor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8N6_9BACT
RNA polymerase factor sigma-70; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative RNA polymerase sigma-E factor
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

584..775
DNA (192bp) protein (64aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(780..1292)
DNA (513bp) protein (171aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative uncharacterized protein id=1974907 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1485..1778
DNA (294bp) protein (98aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1931..2209
DNA (279bp) protein (93aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2340..2654)
DNA (315bp) protein (105aa)
frataxin n=1 Tax=Methyloversatilis universalis RepID=UPI0003706C5B
iron donor protein CyaY; K06202 CyaY protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
iron donor protein CyaY
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2747..3832
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HHJ2_PSEAC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
saccharopine dehydrogenase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4093..5358
DNA (1266bp) protein (422aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9G9C3_PSEAI
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5565..6404
DNA (840bp) protein (280aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CU55_SIDLE
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6401..7102
DNA (702bp) protein (234aa)
phytochrome sensor protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003605778
phytochrome sensor protein; K09921 hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
phytochrome sensor protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7121..8029
DNA (909bp) protein (303aa)
Tyrosine recombinase XerC n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FH63_9GAMM
tyrosine recombinase XerC; K03733 integrase/recombinase XerC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
tyrosine recombinase XerC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8026..8883
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3J7B6_NITOC
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9086..9718
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035CBEDA
TetR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
TetR family transcriptional regulator
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9896..10267
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-P17 RepID=UPI0003768887
ymfK_[C]; putative phage repressor Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..11624)
DNA (1296bp) protein (432aa)
cfa; cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
cfa; cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037FFD95
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11891..12967
DNA (1077bp) protein (359aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Uncharacterized protein id=2162485 bin=GWB2_Desulfobacterales_56_26 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13265..14179
DNA (915bp) protein (305aa)
MFS transporter n=1 Tax=Pseudomonas sp. S9 RepID=UPI0002557398
major facilitator superfamily permease Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
MFS transporter
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14418..14624)
DNA (207bp) protein (69aa)
Cold shock-like protein CspE n=1 Tax=Wohlfahrtiimonas chitiniclastica SH04 RepID=L8XYF0_9GAMM
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
cold-shock DNA-binding domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14891..15214
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GM33_THISH
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_20
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15593..16897)
DNA (1305bp) protein (435aa)
Ammonia channel n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5E0F3_9GAMM
amtB; ammonia channel; K03320 ammonium transporter, Amt family Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
amtB; ammonia channel
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16925..17263)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002D31C78
glnK; Nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
glnK; Nitrogen regulatory protein P-II
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_22
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17718..18071
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7C095_9GAMM
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_23
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18216..18551)
DNA (336bp) protein (112aa)
FKBP-type peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNJ5_SOLCM
FKBP-type peptidyl-prolyl cis-trans isomerase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_24
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18731..19018
DNA (288bp) protein (96aa)
SelT/selW/selH selenoprotein; K07401 selenoprotein W-related protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SelT/selW/selH selenoprotein; K07401 selenoprotein W-related protein id=14431434 bin=bin3_NC10 species=Methylobacillus flagellatus genus=Methylobacillus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
SelT/selW/selH selenoprotein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19181..19588
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI00037DBC59
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_26
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19585..21513
DNA (1929bp) protein (643aa)
peptidase S9, prolyl oligopeptidase active site region (EC:3.4.19.1) Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034B7325
dipeptidyl aminopeptidase/acylaminoacyl peptidase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21929..23413)
DNA (1485bp) protein (495aa)
Ferredoxin n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AI49_9PROT
ferredoxin Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ferredoxin
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23774..24145)
DNA (372bp) protein (124aa)
RNA-binding domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Rna binding protein id=3499609 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
RNA-binding domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_29
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24405..25724)
DNA (1320bp) protein (440aa)
ATP-dependent RNA helicase NGO0650 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DT83_9PROT
DEAD/DEAH box helicase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DEAD/DEAH box helicase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_5973_30
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26069..26338)
DNA (270bp) protein (90aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Displaying items 1-30 of 46 in total

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