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RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_trna_1
unknown

Not on your lists

comp(301..373)
-----------------
DNA (73bp)
transferRNA
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_1
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(483..887)
-----------------
DNA (405bp)
protein (135aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_2
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1245..1730
-----------------
DNA (486bp)
protein (162aa)
tRNA/rRNA methyltransferase (SpoU) Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
tRNA/rRNA methyltransferase SpoU id=5803222 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA/rRNA methyltransferase (SpoU)
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_3
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1771..2709)
-----------------
DNA (939bp)
protein (313aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seg id=5803223 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_4
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3201..4550)
-----------------
DNA (1350bp)
protein (450aa)
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase id=3305457 bin=GWA2_CPR4_42_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
UDP-N-acetylmuramyl-tripeptide synthetase
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_5
unknown

Not on your lists

4751..5146
-----------------
DNA (396bp)
protein (132aa)

This feature has no annotations

RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_6
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5528..6769
-----------------
DNA (1242bp)
protein (414aa)
Aminotransferase n=12 Tax=Campylobacter jejuni RepID=T2DVH5_CAMJU
aminotransferase Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
aminotransferase
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_7
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6844..7107)
-----------------
DNA (264bp)
protein (88aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_8
unknown

Not on your lists

comp(7236..7346)
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_9
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7457..8020)
-----------------
DNA (564bp)
protein (188aa)
RuvA; holliday junction resolvasome, DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RuvA; holliday junction resolvasome, DNA-binding subunit
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_10
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


8148..8420
-----------------
DNA (273bp)
protein (91aa)
30S ribosomal protein S20 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZP1_9BACT
SSU ribosomal protein S20P Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
SSU ribosomal protein S20P
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_11
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8443..9159)
-----------------
DNA (717bp)
protein (239aa)
id=5803220 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
id=5803220 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_12
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9491..11935)
-----------------
DNA (2445bp)
protein (815aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=5803218 bin=OD1_GWC2_34_28 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase I
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_13
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12027..12647)
-----------------
DNA (621bp)
protein (207aa)
protein of unknown function DUF88 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
protein of unknown function DUF88 id=133582 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_14
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12726..12890)
-----------------
DNA (165bp)
protein (55aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_15
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13243..13701)
-----------------
DNA (459bp)
protein (153aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Putative uncharacterized protein id=2966082 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_16
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

13774..15480
-----------------
DNA (1707bp)
protein (569aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW21716.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_17
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

15751..15978
-----------------
DNA (228bp)
protein (76aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_18
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16114..17250
-----------------
DNA (1137bp)
protein (379aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] id=5803214 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase RuvB
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_19
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17286..17819
-----------------
DNA (534bp)
protein (178aa)
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
YebC/PmpR family DNA-binding regulatory protein id=5803211 bin=OD1_GWC2_34_28 species=unknown genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_20
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17931..18428
-----------------
DNA (498bp)
protein (166aa)
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4) Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] id=5803209 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ruvC; RuvC (EC:3.1.22.4)
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_21
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18437..18628
-----------------
DNA (192bp)
protein (64aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_22
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18641..18754
-----------------
DNA (114bp)
protein (38aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_23
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(18786..19976)
-----------------
DNA (1191bp)
protein (397aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase id=2966198 bin=GWA1_ZB2_49_26 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_24
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20164..22773
-----------------
DNA (2610bp)
protein (870aa)
1A family penicillin-binding protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
1A family penicillin-binding protein
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_25
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22985..24175)
-----------------
DNA (1191bp)
protein (397aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=5803204 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase III subunit beta (EC:2.7.7.7)
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_26
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

24364..24564
-----------------
DNA (201bp)
protein (67aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_27
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(24484..25833)
-----------------
DNA (1350bp)
protein (450aa)
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein id=5803203 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chromosomal replication initiation protein
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_28
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


26305..26442
-----------------
DNA (138bp)
protein (46aa)
Ribosomal protein L34 n=1 Tax=uncultured bacterium RepID=K2ELN8_9BACT
rpmH; 50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
rpmH; 50S ribosomal protein L34
RIFCSPLOWO2_02_FULL_OD1_50_120_rifcsplowo2_02_scaffold_4150_29
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

26517..26852
-----------------
DNA (336bp)
protein (112aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Displaying items 1-30 of 37 in total

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