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RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_1
R_Melainabacteria_34_12, Melainabacteria, Bacteria

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comp(2..85)
-----------------
DNA (84bp)
protein (28aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Melainabacteria_34_12_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_2
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(73..384)
-----------------
DNA (312bp)
protein (104aa)
Uncharacterized protein n=2 Tax=Cyanothece RepID=B1X0L6_CYAA5
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_trna_1
unknown

Not on your lists

comp(524..597)
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_3
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(725..1420)
-----------------
DNA (696bp)
protein (232aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_4
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

1953..3947
-----------------
DNA (1995bp)
protein (665aa)
Lig; NAD-dependent DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
adg:Adeg_1094 DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=18495 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Lig; NAD-dependent DNA ligase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_5
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

3952..4278
-----------------
DNA (327bp)
protein (109aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_6
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

4288..4947
-----------------
DNA (660bp)
protein (220aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_7
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(4948..5280)
-----------------
DNA (333bp)
protein (111aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_8
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(5286..6197)
-----------------
DNA (912bp)
protein (304aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Pseudouridine synthase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SKL5_CLOC7
RluA family pseudouridine synthase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_9
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(6170..6625)
-----------------
DNA (456bp)
protein (152aa)
signal peptidase II (EC:3.4.23.36) Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WS44_9NOST
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_10
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(6628..7476)
-----------------
DNA (849bp)
protein (283aa)
lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11
lpxA; acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=LPXA_THEYD
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_11
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

7526..7729
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TG05_9CYAN
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_12
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

7720..8181
-----------------
DNA (462bp)
protein (154aa)
PilT protein domain protein n=1 Tax=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) RepID=B9MMI8_CALBD
PilT protein domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
PilT protein domain-containing protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_13
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

8178..8630
-----------------
DNA (453bp)
protein (151aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_14
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

8739..10427
-----------------
DNA (1689bp)
protein (563aa)
PREDICTED: proline-rich extensin-like protein EPR1-like n=1 Tax=Ceratitis capitata RepID=UPI00032A042B
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_15
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

10581..10868
-----------------
DNA (288bp)
protein (96aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_16
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

11029..12036
-----------------
DNA (1008bp)
protein (336aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_17
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(12056..13288)
-----------------
DNA (1233bp)
protein (411aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZUK2_9BACT
patatin; K07001 NTE family protein Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
patatin
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_18
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

13422..14759
-----------------
DNA (1338bp)
protein (446aa)
leuC; isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
leuC2; isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit id=3932944 bin=GWB1_CP_36_13 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_19
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

14756..15328
-----------------
DNA (573bp)
protein (191aa)
leuD; isopropylmalate isomerase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33 4.2.1.35)
3-isopropylmalate dehydratase small subunit n=1 Tax=Nevskia ramosa RepID=UPI0003B7A111
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_20
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(15280..16809)
-----------------
DNA (1530bp)
protein (510aa)
UniRef90_UPI0001744B9E hypothetical protein VspiD_11040 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744B9E id=18284 bin=ACD20 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
UniRef90_UPI0001744B9E hypothetical protein VspiD_11040 Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_21
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

16828..17955
-----------------
DNA (1128bp)
protein (376aa)
2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC:4.1.1.39); K08965 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [EC:5.3.2.5] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
2,3-diketo-5-methylthiopentyl-1-phosphate enolase (EC:4.1.1.39)
2,3-diketo-5-methylthiopentyl-1-phosphate enolase n=1 Tax=Paenibacillus massiliensis RepID=UPI000369EF47
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_22
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

17957..18628
-----------------
DNA (672bp)
protein (224aa)
mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; K08966 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [EC:3.1.3.87] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_cu
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase n=1 Tax=Bacillus pseudofirmus (strain OF4) RepID=D3FZB6_BACPE
mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_23
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

18691..19263
-----------------
DNA (573bp)
protein (191aa)
mtnB; methylthioribulose-1-phosphate dehydratase (EC:4.2.-.-); K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109] Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
mtnB; methylthioribulose-1-phosphate dehydratase (EC:4.2.-.-)
methylthioribulose-1-phosphate dehydratase n=1 Tax=Paenibacillus sp. A9 RepID=UPI00037688BB
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_24
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

19274..19504
-----------------
DNA (231bp)
protein (77aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_25
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

19482..19844
-----------------
DNA (363bp)
protein (121aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_26
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(19897..20901)
-----------------
DNA (1005bp)
protein (335aa)
hypothetical protein n=1 Tax=Bacillus sp. 37MA RepID=UPI000362C0C1
arginase Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
arginase
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_27
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

comp(20927..21424)
-----------------
DNA (498bp)
protein (166aa)
yqeG; HAD family phosphatase (EC:3.1.3.-); K07015 Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
yqeG; HAD family phosphatase (EC:3.1.3.-)
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; K07015 id=19806 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_28
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

21575..23182
-----------------
DNA (1608bp)
protein (536aa)
Integral membrane protein MviN n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LY79_9FUSO
integral membrane protein MviN Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
integral membrane protein MviN
RIFCSPLOWO2_12_FULL_CP_35_11_rifcsplowo2_12_scaffold_1373_29
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

23282..25030
-----------------
DNA (1749bp)
protein (583aa)
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
Displaying items 1-30 of 35 in total

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