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RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_1
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(2..175)
-----------------
DNA (174bp)
protein (58aa)
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_2
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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278..454
-----------------
DNA (177bp)
protein (59aa)
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_3
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

comp(396..1640)
-----------------
DNA (1245bp)
protein (415aa)
3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
3-oxoacyl-ACP synthase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B38447
3-oxoacyl-(acyl-carrier-protein) synthase 2
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_4
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(1640..2002)
-----------------
DNA (363bp)
protein (121aa)
chemotaxis protein CheY n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B362DD
Fis family two component sigma-54 specific transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
Fis family two component sigma-54 specific transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_5
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(2268..3065)
-----------------
DNA (798bp)
protein (266aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY13_9BACT
sensory transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
sensory transduction histidine kinase
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_6
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(3073..3483)
-----------------
DNA (411bp)
protein (137aa)
chemotaxis protein CheY n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7B130
sigma-54 dependent DNA-binding response regulator Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
sigma-54 dependent DNA-binding response regulator
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_7
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(3638..4438)
-----------------
DNA (801bp)
protein (267aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase id=3714455 bin=GWA2_OP3_52_12 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_8
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(4445..5323)
-----------------
DNA (879bp)
protein (293aa)
5,10-methylenetetrahydrofolate reductase Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
Methylenetetrahydrofolate reductase id=2263393 bin=GWB2_CP_45_9 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
5,10-methylenetetrahydrofolate reductase
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_9
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(5320..6189)
-----------------
DNA (870bp)
protein (290aa)
folD2; methylenetetrahydrofolate dehydrogenase (NADP(+))/cyclohydrolase FolD (EC:1.5.1.5 3.5.4.9) Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
folD2; methylenetetrahydrofolate dehydrogenase (NADP(+))/cyclohydrolase FolD (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIG8_THEPS
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_10
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(6199..6792)
-----------------
DNA (594bp)
protein (198aa)
formiminotransferase-cyclodeaminase Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
Methenyl tetrahydrofolate cyclohydrolase id=3714453 bin=GWA2_OP3_52_12 species=Haloplasma contractile genus=Haloplasma taxon_order=Haloplasmatales taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
formiminotransferase-cyclodeaminase
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_11
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(6937..8325)
-----------------
DNA (1389bp)
protein (463aa)
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
tRNA modification GTPase n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B3EEBC
trmE; tRNA modification GTPase TrmE
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_12
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(8307..9647)
-----------------
DNA (1341bp)
protein (447aa)
FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
FolC bifunctional protein id=4330774 bin=GWC2_OP3_44_8 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
FolC bifunctional protein
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_13
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(9708..10115)
-----------------
DNA (408bp)
protein (136aa)
Nucleotidyltransferase, substrate-binding protein n=1 Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DT93_SULAA
nucleotidyltransferase, substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
nucleotidyltransferase, substrate-binding protein
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_14
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

comp(10399..10524)
-----------------
DNA (126bp)
protein (42aa)
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_15
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

comp(10564..12129)
-----------------
DNA (1566bp)
protein (522aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] Tax=RIFCSPLOWO
Bifunctional purine biosynthesis protein PurH id=4399410 bin=GWA2_OP3_52_12 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_16
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(12126..12965)
-----------------
DNA (840bp)
protein (280aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
branched-chain amino acid aminotransferase (EC:2.6.1.42)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B70FB4
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_17
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(12958..14382)
-----------------
DNA (1425bp)
protein (475aa)
anthranilate synthase component I (EC:4.1.3.27) Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
anthranilate synthase component I (EC:4.1.3.27)
Aminodeoxychorismate synthase, component I id=4399404 bin=GWA2_OP3_52_12 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_18
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(14730..16016)
-----------------
DNA (1287bp)
protein (429aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B4D246
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_19
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(16030..16350)
-----------------
DNA (321bp)
protein (107aa)
Methionyl-tRNA synthase n=1 Tax=planctomycete KSU-1 RepID=I3IQN7_9PLAN
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase
RIFCSPLOWO2_12_FULL_CP_50_11_rifcsplowo2_12_scaffold_5126_20
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

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comp(16426..17070)
-----------------
DNA (645bp)
protein (215aa)
Tax=RIFCSPLOWO2_12_FULL_Omnitrophica_50_11_curated
Displaying 20 items

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