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RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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617..955
-----------------
DNA (339bp)
protein (113aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_trna_1
unknown

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1131..1212
-----------------
DNA (82bp)
transferRNA
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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1308..2633
-----------------
DNA (1326bp)
protein (442aa)
trigger factor n=1 Tax=Pseudomonas pelagia RepID=UPI0003A7D5D7
tig; hypothetical protein; K03545 trigger factor Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
trigger factor
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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2665..3303
-----------------
DNA (639bp)
protein (213aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT50_ALLVD
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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3328..4608
-----------------
DNA (1281bp)
protein (427aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BZE5_NITHN
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
ATP-dependent Clp protease ATP-binding subunit ClpX
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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4762..7194
-----------------
DNA (2433bp)
protein (811aa)
peptidase S16, ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
peptidase S16, ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Beggiatoa alba B18LD RepID=I3CI73_9GAMM
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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7425..7697
-----------------
DNA (273bp)
protein (91aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Histone family protein DNA-binding protein id=2826656 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
histone family protein DNA-binding protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_trna_2
unknown

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7747..7819
-----------------
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_trna_3
unknown

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7833..7906
-----------------
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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7976..9901
-----------------
DNA (1926bp)
protein (642aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5T5_NITWC
PpiC-type peptidyl-prolyl cis-trans isomerase
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9930..11141)
-----------------
DNA (1212bp)
protein (404aa)
Sodium:dicarboxylate symporter n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K5T6_NITWC
sodium:dicarboxylate symporter Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
sodium:dicarboxylate symporter
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11201..11980)
-----------------
DNA (780bp)
protein (260aa)
short-chain dehydrogenase/reductase SDR; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
enoyl-ACP reductase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B31EC0
short-chain dehydrogenase/reductase SDR
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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12112..14271
-----------------
DNA (2160bp)
protein (720aa)
Oligopeptide ABC transporter periplasmic component n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FHC3_9GAMM
dipeptide ABC transporter substrate-binding protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
dipeptide ABC transporter substrate-binding protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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14268..15245
-----------------
DNA (978bp)
protein (326aa)
AppB oligopeptide ABC transporter n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82VE1_NITEU
appB; appB; oligopeptide ABC transporter; K02033 peptide/nickel transport system permease protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
appB; appB; oligopeptide ABC transporter
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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15256..16659
-----------------
DNA (1404bp)
protein (468aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT58_ALLVD
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
binding-protein-dependent transport systems inner membrane component
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16668..17066
-----------------
DNA (399bp)
protein (133aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Thioesterase superfamily protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SH75_GALCS
thioesterase superfamily protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_14
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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17206..18840
-----------------
DNA (1635bp)
protein (545aa)
microcin C ABC transporter ATP-binding protein YejF n=1 Tax=Methylococcus capsulatus RepID=UPI0002F82FD9
peptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein Tax=RifCSPlowO2_12_Gammaproteobacter
peptide ABC transporter ATP-binding protein
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_47_76_rifcsplowo2_12_scaffold_3304_15
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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18915..19445
-----------------
DNA (531bp)
protein (177aa)
GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Burkholderia sp. KJ006 RepID=I2DXS4_9BURK
GTP pyrophosphokinase/Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
GTP pyrophosphokinase/Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
Displaying 18 items

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