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scnpilot_p_inoc_scaffold_2135_4

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_4_partial

near complete RP 42 / 55 MC: 2 BSCG 41 / 51 MC: 2 ASCG 9 / 38 MC: 1
Location: 4138..4713

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7R6_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 59.2
  • Coverage: 191.0
  • Bit_score: 233
  • Evalue 1.70e-58
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 59.2
  • Coverage: 191.0
  • Bit_score: 233
  • Evalue 4.80e-59
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03360.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 59.2
  • Coverage: 191.0
  • Bit_score: 233
  • Evalue 2.40e-58

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
ATGTATACAGATAAAGAATTGCTGGAACGGATATCGGAAAATGATAGCACAGCCTTTACTATATTATATCGCCGCTACTGGGAGGAAATGTTTGTTGTTGCTGTAAAGGCGCTCCGGGAAAAAACTAATGCCGCTGATGTGATACAGGATGTTTTTCTTTCCCTGTGGAACCGGCGTCATACATTAAAAATAGAAGGGTCGCTTATTAATTATCTTCATACTGCAGTCCGGTATAAGGCTATTCATCATATAGAAAAAAATGTTACCCGTCGTGATTACCTTGCAGTGCTGGCTGATGTTTCCGTAAACTGGCTGCCTCCCAATGCGGAAGTAGATCTGCAATTAGAAGAGTTACAAAAGGCGCTCAGCTCTGCAGTGACGAAAATGCCTCCCAAAATGCAGCAGGTGTATATACTAAGCCGGCAGCAGCAGCTCAGCCATAAAGAGATAGCCGAGCAATTAAGCGTTTCTGTTGAAACGGTAAAAAAGCATATACAACATGCATTGCAACTTATAAAAACAGCAATTCAATACACTCCTACTTTTATTTCGGTGCTCATTTCTTATTTATTCTGA
PROTEIN sequence
Length: 192
MYTDKELLERISENDSTAFTILYRRYWEEMFVVAVKALREKTNAADVIQDVFLSLWNRRHTLKIEGSLINYLHTAVRYKAIHHIEKNVTRRDYLAVLADVSVNWLPPNAEVDLQLEELQKALSSAVTKMPPKMQQVYILSRQQQLSHKEIAEQLSVSVETVKKHIQHALQLIKTAIQYTPTFISVLISYLF*