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scnpilot_p_inoc_scaffold_1604_20

Organism: SCNpilot_P_inoc_Burkholderiales_68_20

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(18049..18432)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q295_ACIAP similarity UNIREF
DB: UNIREF100
  • Identity: 99.2
  • Coverage: 127.0
  • Bit_score: 248
  • Evalue 2.60e-63
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 98.4
  • Coverage: 127.0
  • Bit_score: 248
  • Evalue 7.40e-64
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Com similarity UNIPROT
DB: UniProtKB
  • Identity: 99.2
  • Coverage: 127.0
  • Bit_score: 248
  • Evalue 3.70e-63

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Taxonomy

Acidovorax avenae → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 384
GAGATCCCCGAGGACAAGATCCGCAAGATCATGAAGATCGCCAAGGAGCCGATCTCGATGGAAACCCCCATCGGCGACGACGACGACAGCCACCTGGGCGACTTCATCGAGGACAGCGCCAACACCGCGCCCATCGACGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTGAAGGACATCCTCGACGGCCTGACCCCACGCGAGGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGTCCACCGACCACACACTGGAAGAAGTGGGCAAGCAGTTCGACGTGACGCGCGAACGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGAAGCACCCGAGCCGCAGCGACAAGCTGCGCAGCTTCATCGACTCGCTGTAA
PROTEIN sequence
Length: 128
EIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPIDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL*