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scnpilot_p_inoc_scaffold_2631_4

Organism: SCNpilot_P_inoc_Thiobacillus_63_16_multi

partial RP 38 / 55 MC: 1 BSCG 35 / 51 ASCG 9 / 38 MC: 2
Location: comp(1406..2122)

Top 3 Functional Annotations

Value Algorithm Source
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12493116 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.2
  • Coverage: 239.0
  • Bit_score: 463
  • Evalue 1.30e-127
  • rbh
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 65.1
  • Coverage: 235.0
  • Bit_score: 289
  • Evalue 6.00e-75
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 58.4
  • Coverage: 231.0
  • Bit_score: 263
  • Evalue 7.10e-68

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Taxonomy

R_Gammaproteobacteria_61_13 → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 717
ATGCAACACGCCATGCCACAGATACCAATCGGGGAATTGACGGACACCGGACTGGCGGAGCGCATTGCCTCGGGAGACATGCTGGCGTTGCAGTACTTGATGCGACGACACAACCAGACGCTCTACCGCACCGCACGCAGCATCCTGAAAGACGATGCCGAGGCCGAGGATGCCGTACAGGAGGCCTATGTGCTGGCCTATCGCGCAATGGATCAGTTTCGCGGCGATGCGAAACTGTCGACCTGGCTGATCCGTATTGCGGTCAATGTGTCGATCCGGCGAGCACGAAAACTCAACCGCAGCGCCGAGGTGATCGACCTGGTGGGCGATCCGGATGCGCTGCGGGGGACGGATGAGGATTTGCTGGAGGCCGGGATGGATGAACATGCGCCCGAACAGCCTGAACATGTCGCCTTGCGCGCGGAAACCCGACGGCTGATCGAAGACAAGATCAACCGGCTGCCGGATATCTTCCGCACGGTATTCGTCATGCGTGCCGTCGAGGAGATGTCGGTGGCCGAGACGGCCATTTGCCTGGATATTCCGGAGGCCACGGTACGTACGCGCTATTTCCGGGCGAAAAGCCTGCTGCGTGAAGCCCTGGCGCGCGAGATCGACTTCTGCCTGGGCGAGACATTCTCGTTTGCCGGAGAGCGTTGCGACCGCATCGTCGCCGGCGTGTTACGCCGGCTCGACACGCCACCCGGCACATCCTGA
PROTEIN sequence
Length: 239
MQHAMPQIPIGELTDTGLAERIASGDMLALQYLMRRHNQTLYRTARSILKDDAEAEDAVQEAYVLAYRAMDQFRGDAKLSTWLIRIAVNVSIRRARKLNRSAEVIDLVGDPDALRGTDEDLLEAGMDEHAPEQPEHVALRAETRRLIEDKINRLPDIFRTVFVMRAVEEMSVAETAICLDIPEATVRTRYFRAKSLLREALAREIDFCLGETFSFAGERCDRIVAGVLRRLDTPPGTS*