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scnpilot_p_inoc_scaffold_119_176

Organism: SCNpilot_P_inoc_Burkholderiales_67_12

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(179180..179719)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W218_ACISJ similarity UNIREF
DB: UNIREF100
  • Identity: 84.4
  • Coverage: 179.0
  • Bit_score: 298
  • Evalue 5.30e-78
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 84.4
  • Coverage: 179.0
  • Bit_score: 298
  • Evalue 1.50e-78
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABM40293.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 84.4
  • Coverage: 179.0
  • Bit_score: 298
  • Evalue 7.40e-78

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Taxonomy

Acidovorax sp. JS42 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGCTCTTAAGCCACATGATCCCAACCGCCGAGTCGCGCTACAACCAATGGGTGCGCGAGCATTACCGTTTTCTGCTGCGCAGCGCCTGGGCCTTGACGGGCTCGCGCGCGCTGGCCGAGGACGTGGTGCAGGACTGCTTCACCAGCGCTTGGCGCTACCGCAACCAGCTTCGCGATGCCAGCCTGGCGCGCGCCTGGCTGTTCCAGATCATGCGCCGCCATGCGCTGCGCCATTTGGTCCCTGACCAGCCCCTGGTCTACACCGAGCAGGCTCCCGACACGGTGGCCCCGCCTTCGGCACTCGACGACCAGCTCGACGTGGTCAAGGCCCTGGGCCGCATCGCGCCCATCCACCGCGAGGTGCTGGTGCTGTACTACTTCGACGACATGCCCACGGCCCAGATGGCCGAGGCGCTGGATATCGCCCCCGGCACGGTGCTGTCGCGCCTGGCGCGCGCGCGCGAGGCCCTCAAGGCTGCGCTCAGCCCCGCGCCCACGGCCAGCGCCAGCGTGATTCCCATGCGAAAGGCCCAGACATGA
PROTEIN sequence
Length: 180
MLLSHMIPTAESRYNQWVREHYRFLLRSAWALTGSRALAEDVVQDCFTSAWRYRNQLRDASLARAWLFQIMRRHALRHLVPDQPLVYTEQAPDTVAPPSALDDQLDVVKALGRIAPIHREVLVLYYFDDMPTAQMAEALDIAPGTVLSRLARAREALKAALSPAPTASASVIPMRKAQT*